Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_P02
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 157 7e-39
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.81
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 1.1
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_24560| Best HMM Match : Ank (HMM E-Value=0) 29 3.3
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 28 5.7
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 5.7
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 5.7
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 28 7.6
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 28 7.6
SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09) 28 7.6
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 157 bits (381), Expect = 7e-39
Identities = 80/142 (56%), Positives = 104/142 (73%)
Frame = +3
Query: 45 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 224
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 225 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 404
+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS L
Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRSH-LDKT 125
Query: 405 YDAILEDLVFPAEIVGKRIRGQ 470
++ + V K++ G+
Sbjct: 126 QQTTIDHKLETFSTVYKKLTGK 147
Score = 62.5 bits (145), Expect = 3e-10
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +1
Query: 499 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 600
HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.81
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +3
Query: 129 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 293
+ + K L+E+ I ++K+ E + + KS PKLKA Q + + KK
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320
Query: 294 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 386
K V+ LP+ +H+ AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 30.7 bits (66), Expect = 1.1
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Frame = +3
Query: 36 VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 197
V+MS ++ +++SG +S E+ + E N+ LK +L E L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726
Query: 198 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 371
K + +YV M KL++ Q ELEK+ ++ ++I P K S T VA +
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 584 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTPDALAYDLSRE 432
T+R ++ ++DW ++ C CW +S T+ S +N+ AY SRE
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFSQVLTNIKVPIPAY--SRE 168
>SB_24560| Best HMM Match : Ank (HMM E-Value=0)
Length = 248
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +3
Query: 408 DAILEDLVFPAEIVGKRIRGQVGRLTAH*GALRQKPTDNY*T*SGHLPVCI 560
DA+ EDL P + K+ +VGRL GA K D T H+ CI
Sbjct: 45 DAMKEDLSTPLHVACKKGSMEVGRLLVEKGAALDKKNDKGET-PLHMAACI 94
>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 605 GSG-NSKVTSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTPDALAYDLSRED 429
G+G N++ F DWK+S +++ S+ L +C ++ P A A DLS
Sbjct: 391 GTGKNARGIQNLFVFPVDDWKISHDALLILTNHTSESWLFACNGASGHPCATAVDLSHFA 450
Query: 428 QVL 420
Q+L
Sbjct: 451 QLL 453
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 346 TKPVLLTNK--RGHAQGH*PLCTMXXXXXXXXXXXXXXXXXGVKLDGSQLIKVHLDKNQQ 519
TK +L+T K + + PLC G+ LDG +VH+D+ +
Sbjct: 713 TKAILVTGKWIGRNVEKDPPLCLDLKIGDSMIEEISSYKLLGITLDGQMTFEVHIDELSK 772
Query: 520 TTIEHK-VDTFQSVYK 564
T ++ T++S+ K
Sbjct: 773 TFKTYRTTKTYKSLLK 788
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 81 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 248
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 133 PTSKPNFGSFTLQKLKKLNYTIRS 204
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 338 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 198
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +2
Query: 368 TKEATLKDIDLCV---RCYPRGL---GLPC*DRRQAHQGSSWTAHSSLRC 499
TK T D+ C+ RCY G PC D Q+ Q WT +++LRC
Sbjct: 393 TKVGTQCDLRQCLISGRCYSYGTVNPSNPCQDC-QSRQKMGWTNNNALRC 441
>SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)
Length = 227
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 533 CSIVVCWFLSKCTLMSCEPSNLTPDALAYDLSREDQVLEDSIVHRGQ 393
C V+ W CTL S P+ L A D+SR +L D + G+
Sbjct: 149 CRTVLAWLDQHCTLPSLRPAVL---AALRDISRTTSILTDPSLVPGE 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,747
Number of Sequences: 59808
Number of extensions: 395223
Number of successful extensions: 1145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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