Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_O19
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 134 2e-32
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 28 1.2
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 1.2
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 27 2.1
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 2.8
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 27 3.7
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 26 6.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 6.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 8.6
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.6
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 134 bits (323), Expect = 2e-32
Identities = 58/112 (51%), Positives = 78/112 (69%)
Frame = +2
Query: 407 KRLTPGXKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVE 586
K++ K+VGWYHTGP+L +D+ IN L+++Y PN VLVIID KPK +GLPT AY A++
Sbjct: 90 KKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAID 149
Query: 587 EVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIXDTTVGSLSQRITNQ 742
E+ DDG+ +SRTF H+PS I HLLRD D +VG+L+ R+T Q
Sbjct: 150 EIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQ 201
Score = 83.8 bits (198), Expect = 2e-17
Identities = 38/71 (53%), Positives = 56/71 (78%)
Frame = +1
Query: 217 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 396
D +NR +K G ++RVVG+LLG V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M
Sbjct: 29 DSYNRSAK-GTKRRVVGILLG-QNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMN 86
Query: 397 GMFKKVNARXK 429
MFKK+NA K
Sbjct: 87 EMFKKINANEK 97
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 431 VVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 535
VVGWYH+ P L DI + + P +V V++D
Sbjct: 107 VVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVD 145
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 240 NRESETSSRCSIGLLESQGCLRRIEQLRSPV 332
NRE E SS +G + GC R++ Q+R V
Sbjct: 210 NREDEESSLAEVGYDDIGGCRRQMAQIRELV 240
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 55 MNNNFVI*NRTATNPEYISKNTYVKIIKMPSQE 153
+ NNFV N A E K TY+ + MPS E
Sbjct: 49 LKNNFVEENDNAVLKEEPGKYTYMSLFTMPSTE 81
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -2
Query: 364 TRQICLCRLHQTGLRSCSIRLRHPWLSNNPIEHRLLVSD 248
T++ + G+R C +++ HPWL + E + + D
Sbjct: 753 TKKCAMTTSRVLGVRICGMQVWHPWLQSYTFEDKYVGRD 791
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 371 SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRT 267
S Q+ LSL +SSNGT + T P+ L +PN T
Sbjct: 182 SSKQSLLSLKNSSNGTVYVSTTLPCPVEL-KPNIT 215
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 82 YFILQSYYSLNYTKL 38
YF+ Q +YS NYTKL
Sbjct: 13 YFVRQYFYSGNYTKL 27
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 341 TTKTNLSGSLTMIT 382
TTK+NLSG+L M+T
Sbjct: 182 TTKSNLSGNLNMVT 195
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 509 PNSVLVIIDAKPKDLGLPT-EAYQAVEEVHDD 601
P+ L + D+KP+ LG+ T + Y +V DD
Sbjct: 567 PDHTLRVKDSKPESLGIDTVKQYTGYLDVEDD 598
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 113 LLIYSGFVAVLFYITKLLFIKLHEIRVTYYYLL 15
+++Y + +L + L+ LH++RV Y++L
Sbjct: 377 MMLYGFILGILALVVHLVLDVLHKVRVQPYFVL 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,675
Number of Sequences: 5004
Number of extensions: 55457
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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