Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_O19
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 92 4e-19
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 40 0.002
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 32 0.55
01_01_0691 - 5328169-5328228,5328300-5328488,5328611-5328768,532... 31 1.3
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 29 2.9
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 28 9.0
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 92.3 bits (219), Expect = 4e-19
Identities = 40/68 (58%), Positives = 57/68 (83%)
Frame = +1
Query: 217 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 396
DH+NR+++ +KRVVGVLLG ++G +DV+NS+AVPF+EDDKD +WFLDH+Y E+M+
Sbjct: 29 DHYNRVAR-DTRKRVVGVLLGT-SSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMF 86
Query: 397 GMFKKVNA 420
MFK++NA
Sbjct: 87 SMFKRINA 94
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 680 HLLRDIXDTTVGSLSQRITNQ 742
HLLRD+ DTT+ +L+ +T++
Sbjct: 166 HLLRDVKDTTISTLATEVTSK 186
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 253 KRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAR 423
+RV+G LLG G + V NS+ VP +E + LD +Y NMY KVN +
Sbjct: 41 ERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVA---LDIEYHHNMYASHHKVNPK 94
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 413 LTPGXKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEV 592
LT + GW+HT N + + + PN L IID K L Y AVE +
Sbjct: 444 LTQEVMIDGWFHTDDDYMPNTMYNTGDVGEWQPNGSLKIIDRKKNIFKLSQGEYVAVENL 503
Query: 593 HD 598
+
Sbjct: 504 EN 505
>01_01_0691 -
5328169-5328228,5328300-5328488,5328611-5328768,
5329677-5329767,5330359-5330438,5330472-5330533,
5330603-5330730,5331290-5331508,5331586-5331715,
5331804-5331870,5331968-5332062,5332150-5332221,
5332307-5332362,5332485-5332554,5332662-5332735,
5332820-5332954,5334135-5334314
Length = 621
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = -1
Query: 446 GTSQQLFXLALTFLNIPYMFSK*SWSRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRT 267
G + Q+ L+ FL+ ++ + W RN SL+ S+NG++ + ++ TP A QQ +
Sbjct: 441 GFTAQVHELSHYFLHKEWIMEQ--WERNYYITSLAGSNNGSSVVIMSTGTPYA-QQSYKV 497
Query: 266 PTTRF*FPILLMRLKW 219
+ FP + KW
Sbjct: 498 SDS---FPFKWINKKW 510
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 680 HLLRDIXDTTVGSLSQRITNQ 742
HLL D+ DTT+G+L+ +T++
Sbjct: 579 HLLMDVKDTTIGTLATEVTSK 599
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 503 YCPNSVLVIIDAKPKD 550
Y PN VLVIID +PK+
Sbjct: 552 YVPNPVLVIIDVQPKE 567
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 27.9 bits (59), Expect = 9.0
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = -2
Query: 664 FSLLCTNFTWNMFKGPRSWCTIIVYFL 584
++++C W +GP+ W ++YF+
Sbjct: 441 WNIICVTAAWIKGEGPKIWFLAVIYFI 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,168
Number of Sequences: 37544
Number of extensions: 333482
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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