Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O19
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   161   4e-40
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    37   0.013
AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  161 bits (392), Expect = 4e-40
 Identities = 72/105 (68%), Positives = 85/105 (80%)
 Frame = +2

Query: 428 KVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGT 607
           K+VGWYHTGPKLH+NDIAINE ++R+CPN VLVIIDA+PK++GLPTEAY  V+EVHDDGT
Sbjct: 123 KIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPKNIGLPTEAYIEVQEVHDDGT 182

Query: 608 PTSRTFEHVPSEIXXXXXXXXXXXHLLRDIXDTTVGSLSQRITNQ 742
           P  +TFEHVPS+I           HLLRDI D T G+LSQRIT+Q
Sbjct: 183 PPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQRITDQ 227



 Score =  109 bits (262), Expect = 2e-24
 Identities = 54/89 (60%), Positives = 62/89 (69%)
 Frame = +1

Query: 217 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 396
           DHFNR+SK  + KRVVGVLLG  +    LD+ NSFAVPFDEDDKDKS WFLD DYLE+MY
Sbjct: 53  DHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMDYLESMY 112

Query: 397 GMFKKVNARXKSCWLVPHWT*TSSE*HSN 483
           GMF KV A+ K    +  W  T  + H N
Sbjct: 113 GMFYKVAAKEK----IVGWYHTGPKLHKN 137


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +1

Query: 235 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 414
           +K   Q++ +G L+G +  KG + V+N FA+PF+E + D  +   D  + + M    KK 
Sbjct: 29  AKNTGQEKCMGTLMGYYE-KGSIQVTNCFAIPFNESNDDLEI---DDQFNQQMISALKKT 84

Query: 415 N 417
           +
Sbjct: 85  S 85


>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 377 SWSRNQTDLSLSSSSNGTAKLFDTSKTP 294
           +WS  +T L  S S++G+ KL+DT   P
Sbjct: 282 AWSPTETGLLASCSADGSIKLWDTRSAP 309


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 371  SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPTTR 255
            SR+ +    SS   G+ +L D      AL +PNRTP  R
Sbjct: 3092 SRHVSSAEESSEERGSVELHDVGHHS-ALHEPNRTPNRR 3129


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 371  SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPTTR 255
            SR+ +    SS   G+ +L D      AL +PNRTP  R
Sbjct: 3101 SRHVSSAEESSEERGSVELHDVGHHS-ALHEPNRTPNRR 3138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,403
Number of Sequences: 27780
Number of extensions: 310748
Number of successful extensions: 887
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)