Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O19
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.57 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.99 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +2

Query: 431 VVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTP 610
           ++ W   GP+ H+    I ++  +Y P    +++  +PK   L     + + E+ +   P
Sbjct: 317 IINWNFRGPRTHRMPQLIRKIFLKYLPT---ILMMRRPKKTRL-----RWMMEIPNVTLP 368

Query: 611 TSRTFEHVPSEI 646
           TS T+   P+E+
Sbjct: 369 TS-TYSGSPTEL 379


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 117 IFTYIFGICCCSILYYKVIIH 55
           IF ++F +C   IL   V+IH
Sbjct: 14  IFNFVFAVCGLGILTLGVLIH 34


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +1

Query: 355 SVWFLDHDY-LENMYGMF 405
           S W+L+HDY LEN    F
Sbjct: 206 SGWYLNHDYNLENKLNYF 223


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 638  LEHVQRSSKLVYHHRVLPLLL 576
            LEH     +L  HHR LP +L
Sbjct: 1088 LEHGAAGLRLCLHHRDLPCVL 1108


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 600 MVHQLRGPLNMFQVKLVQRRLXKWEXS 680
           + H LRG  N++  KL+  R  K E S
Sbjct: 621 LYHVLRGNENIYSGKLISMRHLKEEVS 647


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
 Frame = +1

Query: 355 SVWFLDHDY-LEN 390
           S W+L+HDY LEN
Sbjct: 206 SGWYLNHDYNLEN 218


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 106 YIRDLLLFYFILQSYYSLNYT 44
           +  DLL +  +L+ +YS+N T
Sbjct: 228 FTTDLLSYNILLRRHYSMNST 248


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 459  LGPVWYQPTTFXPGVNLFEH 400
            LGP W+   T  P +N   H
Sbjct: 1463 LGPCWHAVMTTYPRINPDNH 1482


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 551 LGLPTEAYQAVEEVHD 598
           LGL TE YQAV+E+HD
Sbjct: 330 LGL-TE-YQAVKEMHD 343


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 500 RYCPNSVLVIIDAKPKDL 553
           ++C N+ +V  D KPK++
Sbjct: 169 QFCHNAGIVHADVKPKNI 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,334
Number of Sequences: 438
Number of extensions: 3675
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)