Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O14
         (804 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    27   0.13 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +1

Query: 544 LVEEDASFRSKPPNYLSAQAPPSKFPERHFCAVCGFPSNYTCIPCGARYCSVKCLGTHLD 723
           LVE + +   K      A  P S+F    F    GF S   C  C A+Y  +KC   + +
Sbjct: 738 LVESNRNVPQKCIFNGQAYFPGSRF--HPFLIPTGFDSCTVCT-CDAKYLEIKCKRIYNE 794

Query: 724 TRCLK 738
            +C K
Sbjct: 795 KQCCK 799


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 415 PHADLVMSKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTF--AQLVEEDASF 567
           PH        VP++    EK T +K S+       R R  +   QL+E +  F
Sbjct: 102 PHGMGSPGVNVPEYPWMKEKKTTRKSSQQENGLPRRLRTAYTNTQLLELEKEF 154


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +2

Query: 521 DFGKRLRSW*KRMQVLDQNLLTTCPHKRHLLNFPSDISVLFVGFHRITHVYHVV 682
           +F  + R W   M     N+L       H +    +IS+L++G+  I  +  V+
Sbjct: 845 EFYNQRRRW---MPSTMANILDLLMDYEHTVKINENISMLYIGYQIILMIGTVI 895


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +2

Query: 521 DFGKRLRSW*KRMQVLDQNLLTTCPHKRHLLNFPSDISVLFVGFHRITHVYHVV 682
           +F  + R W   M     N+L       H +    +IS+L++G+  I  +  V+
Sbjct: 845 EFYNQRRRW---MPSTMANILDLLMDYEHTVKINENISMLYIGYQIILMIGTVI 895


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,854
Number of Sequences: 336
Number of extensions: 4272
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)