Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_O14
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 54 2e-07
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 41 0.001
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 39 0.005
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 38 0.007
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 31 1.1
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 31 1.1
11_05_0036 - 18514964-18515042,18515268-18515385,18515820-185158... 29 4.3
03_02_0560 + 9462996-9463454 29 5.7
06_01_0610 - 4415080-4415461,4415872-4416851 28 7.6
12_01_0202 - 1513835-1514282,1514506-1514571,1515420-1515508,151... 28 10.0
11_01_0610 + 4889158-4889386,4889584-4890297,4890814-4891166,489... 28 10.0
01_01_0358 - 2819235-2819696 28 10.0
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +1
Query: 46 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQA 210
MVN +KG+ + CD M QF+++L+ ++ KFIL LD TH+F+ + E +++
Sbjct: 349 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRS 403
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 544 LVEEDASFRSKPPNYLSAQAPPSKFPERHFCAVCGFP-SNYTCIPCGARYCSVKCLGTH 717
+V EDA+ S + +A A S R C VC + YTC C ARYCS+ C H
Sbjct: 6 VVSEDAAASSSSSSSSAAAASFSLAETRVICRVCQKQFAQYTCPRCNARYCSLPCYKGH 64
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 574 KPPNYLSAQAPPSKFPERHFCAVCGFPSNYTCIPC-GARYCSVKCLGTH 717
+P Y+ ++ PS PE H CA C P+ C C RYCS KC H
Sbjct: 14 RPMPYM--RSAPSARPEYHECATCHGPAKTRCSRCKSVRYCSGKCQIIH 60
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 38.3 bits (85), Expect = 0.007
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 580 PNYLSAQAPPSKFPERHFCAVCGFPSNY 663
PNYL+ Q+PPS +P + +C + GF + Y
Sbjct: 57 PNYLNIQSPPSIYPPKRYCDITGFEAPY 84
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 547 VEEDASFRSKPPNYLSAQ--APPSKFPERHFCAVCG---FPSNYTCIPCGARYCS 696
V ED+ + SK + +S Q A K C+ CG + S +CI C AR+CS
Sbjct: 168 VTEDSRYESKEFDDVSEQYVAVTKKEKRGRTCSRCGKRKWESKESCIVCDARFCS 222
>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +1
Query: 466 NEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSAQAPPSKFPERHFCAVC 645
NE R +A R R++ + S S P AQAPPS+ P F V
Sbjct: 1051 NEPKMRSSSRVAAMSNAGRRRRSLTSIAPSPVSSSSFPSGAREAQAPPSQLPSWKFSQVL 1110
Query: 646 G 648
G
Sbjct: 1111 G 1111
>11_05_0036 -
18514964-18515042,18515268-18515385,18515820-18515878,
18516006-18516205
Length = 151
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 592 SAQAPPSKFPERHFCAVCGFP 654
S + P K P+++FC VCG P
Sbjct: 71 SDRTPFDKLPDKYFCPVCGAP 91
>03_02_0560 + 9462996-9463454
Length = 152
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 427 LVMSKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSA 597
L SK K + +K RKK KS E YK+ K Q V D SK + +++
Sbjct: 37 LPASKASSKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQ-VHPDIGISSKAMSIMNS 92
>06_01_0610 - 4415080-4415461,4415872-4416851
Length = 453
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 654 WKPTNSTEMSLGKFRRWRL 598
+KPT S EM L KF RW L
Sbjct: 419 YKPTTSLEMGLKKFVRWYL 437
>12_01_0202 -
1513835-1514282,1514506-1514571,1515420-1515508,
1518011-1518352
Length = 314
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 230 SIKSSTRACRVSTISADMNKCVSSRS*RINFLP 132
S + T ACR S +SAD SS + FLP
Sbjct: 43 SFTTPTDACRCSAVSADFQAAASSNAVWERFLP 75
>11_01_0610 +
4889158-4889386,4889584-4890297,4890814-4891166,
4891619-4891830,4892633-4892889,4892984-4893162,
4893901-4893948
Length = 663
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 430 VMSKKVPKFADSNEKPTRK-KKSKSAEYYKMRFRKTFAQLVE--EDASFRSKPPNYLSAQ 600
V KKV D +K K+ K+ +MRF + AQLVE ++ F S Y+ +
Sbjct: 290 VNQKKVSATGDKKHASKKKSKRKKTGSTCEMRFLNSTAQLVEPAKNEKFASFNLEYVEVE 349
Query: 601 APP 609
P
Sbjct: 350 DKP 352
>01_01_0358 - 2819235-2819696
Length = 153
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 442 KVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQLVEEDASFRSKPPNYLSA 597
K K + +K RKK KS E YK+ K Q V D SK + +++
Sbjct: 43 KAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQ-VHPDIGISSKAMSIMNS 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,010,184
Number of Sequences: 37544
Number of extensions: 437431
Number of successful extensions: 1124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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