Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O13
         (562 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.44 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.59 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.4  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   7.2  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 1   RPADAFFRLPTQG--QDAFRHSK 63
           RPAD +FRL T+G  +D  R +K
Sbjct: 37  RPADEYFRLTTEGDCRDVVRCTK 59


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin
          deacetylase 2A protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 1  RPADAFFRLPTQG 39
          RPAD +FRL T+G
Sbjct: 37 RPADEYFRLTTEG 49


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 6/27 (22%), Positives = 20/27 (74%)
 Frame = -2

Query: 96  TVLTILSCSTSFTVTERILTLCWQPEE 16
           T+L I++CS   + +++++ +C++ ++
Sbjct: 271 TILLIMTCSGVHSESQKLVGVCYEYQD 297


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -3

Query: 323 CRNVKV*LHYVCAHRRSW*QS*LQQVSECKYDEGWQHNAHRTNQ 192
           C N++      C+    W    L +  +C Y EGW   +   +Q
Sbjct: 200 CDNLQYSFDNQCSGTIDWA---LPKQEDCFYQEGWNGQSFDVSQ 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,046
Number of Sequences: 336
Number of extensions: 2447
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)