Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O10
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    52   3e-08
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   4.2  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.3  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    24   9.6  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +2

Query: 20  PGLLDLKGKAKFDAWHKLAGTSXEDAQKAYIEIVEGLIASIGLK 151
           PGLLDLKGK K++AW +L G S EDA   YI  V+ L    G+K
Sbjct: 44  PGLLDLKGKFKWNAWEELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 281 HFCLKCFFFKNTNSY 325
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 269 WRQKSLMRDDDAKNRAYLYSTLDN-ENYHVLASLKIKSFIL 150
           W QK    D  A+N  YL S +      HV+ S  I S IL
Sbjct: 676 WVQKYFFEDLKARNTLYLISEMRTFLRDHVVPSFHIGSVIL 716


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 409 YFIALQYYALAPWKY 365
           YF++LQ Y L  W+Y
Sbjct: 15  YFLSLQSYVLVNWQY 29


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 260 FDAIFILHFCLKCFFFKNTNSY 325
           FD+ F+  + + CFF  + N++
Sbjct: 76  FDSTFVFGYIVNCFFIIHLNTF 97


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 124 FDDLDVGFLGILXXSAGQFVPSVKFGFTL 38
           +DD++    G L  S G  +P +   FTL
Sbjct: 476 WDDIESDMYGFLTWSMGSQIPGIITAFTL 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,397
Number of Sequences: 5004
Number of extensions: 27253
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)