Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O09
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    30   0.20 
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   3.2  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   9.7  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   9.7  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -3

Query: 108  LHQISRSYLPYLQSITEFNRQFVMKTIWNGPIFIDF 1
            LH+I RS+L +L SI    +Q V++ +WN P+ + F
Sbjct: 1184 LHKI-RSFLVHLLSINSHGKQSVVEDLWN-PLILKF 1217


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 213 VFDTALQRFLSMKVT-QFEYFTVNKRTSLFGFFVIVVPMFTFGTLIW 350
           V  T+ +   S+K++ + +YF V    S FGFF+ VV    F  ++W
Sbjct: 172 VLYTSKRIIKSLKLSDRSDYFLV---VSGFGFFIFVVVYLLFKRIVW 215


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 138 RRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKV 254
           +RAEMRRE  + R    K   EAG V  +  +R    KV
Sbjct: 52  KRAEMRREKKRLRKEERKRKIEAGEVVKSQKKRIRLGKV 90


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
 Frame = +2

Query: 125 NPSLKAC*NETGVLET-----------KNKPLEKRFGGWLCFRHSIAKVSVHESNTV 262
           N SL A   ETG LE            +N+P  +R  GWL   ++I  V+  + +++
Sbjct: 138 NESLLAVCTETGALELFDSRFYDRQNEENQPSARRIHGWLAHNNAIFSVNFSKDDSL 194


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 99  SDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTV 278
           SD+ +N I++  ++       F     + +       Y+  T   R+L+ KV + EY TV
Sbjct: 252 SDSSVNFIESNNTKFMPNDELFEPDGISRFSTQQARDYIQRTLGPRYLTGKVVEQEYLTV 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,733
Number of Sequences: 5004
Number of extensions: 40766
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)