Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_O07
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 194 2e-50
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.80
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 28 1.4
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 27 4.3
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 4.3
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 26 5.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.6
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 5.6
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 7.5
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 7.5
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 25 9.9
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 25 9.9
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.9
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 194 bits (472), Expect = 2e-50
Identities = 99/224 (44%), Positives = 139/224 (62%), Gaps = 6/224 (2%)
Frame = +2
Query: 131 MAWRSHGANNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSATIS 310
M W + ++N L+++L + + + AM A R YCP SPY DSPQSIG+ TIS
Sbjct: 1 MFWSFNLSSNAALVQHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGYGVTIS 60
Query: 311 APHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLAT 490
APHMHA AL++L+ L PG ALD+GSGSGYL A MA M+ G V GIEHI +LV +
Sbjct: 61 APHMHATALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGTVKGIEHIPQLVETSK 120
Query: 491 KNIQND------NPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLK 652
KN+ D + +R+++ VGDGR+G + + AIHVGA+A LPQ L+DQLK
Sbjct: 121 KNLLKDINHDEVLMEMYKEKRLQINVGDGRMGTSEDEKFDAIHVGASASELPQKLVDQLK 180
Query: 653 PGGRLIVPVGPEGGEQHLTQVDKAQDGTTTVKKLMSVIYVPLTD 784
G++++P+G Q++ ++K + G + + L V YVPLTD
Sbjct: 181 SPGKILIPIGTY--SQNIYLIEKNEQGKISKRTLFPVRYVPLTD 222
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.1 bits (62), Expect = 0.80
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 773 EHKSHSSISLQLLFHPVLYQPESNVVHHPQALQELLASLPVS 648
E+ SH+ +LQ P+ PE + VH P+A + + LP S
Sbjct: 76 EYNSHNKHALQNSQLPLPKTPEKSTVHRPKANKVEVTDLPSS 117
>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 820 KHLSPRTILVLLVS*WNINHTHQFLYSCCSILC--FINLSQMLFTTLRPY 677
KHL+ R LL IN T++F++ ILC F+N S + PY
Sbjct: 42 KHLTDRNDDALLKVDQTINKTNRFIFRKLKILCPSFLNYSFINIYCFGPY 91
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +2
Query: 347 KNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLS 526
K L + L+VG G+G LT ML + +V+ +E + TK +Q P
Sbjct: 45 KADLKQSDTVLEVGPGTGNLT---VRMLEKARKVIAVEMDPRMAAEITKRVQG-TP---K 97
Query: 527 SERIKLVVGD 556
+++++V+GD
Sbjct: 98 EKKLQVVLGD 107
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 809 AKDDIGAPCQL-MEHKSHSSISLQLLFHPVLYQPESNVVHHPQALQE 672
AK D G P + ++ K HSS +L+ + P + + + +H P+ E
Sbjct: 144 AKTDAGEPVLIPVKLKKHSSTNLRSIIRPNIEGVQIHTIHLPRPKTE 190
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 737 LFHPVLYQPESNVVHHPQALQELLA--SLPVSIDQLELVVKWELQ 609
L P+ +P S V +P + + + LP+ ++Q VV+WE +
Sbjct: 303 LDEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFK 347
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.6
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +2
Query: 365 GEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKL 544
G+K LD+G G G L+ MA LG + V ++ + +A K+ D P L + R++
Sbjct: 78 GKKILDIGCGGGILSESMA-RLGAS--VTAVDASPMAIEVAKKHASLD-PVL--NGRLEY 131
Query: 545 VVGDGRLGYPSEAPYSAIHVGAAAPTLPQ------ALIDQLKPGGRLIV 673
+ G G + + + Q +L++++KP GRL++
Sbjct: 132 IHGSVE-GSQLPTTFDVVTCMEVLEHVEQPRDFLFSLMEKVKPNGRLVL 179
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 757 HQFLYSCCSILCFINLSQMLFTTLRPYRN 671
H +SCCS++ NL L L+ Y N
Sbjct: 1780 HTLYFSCCSMIAKENLDDQLRELLKNYFN 1808
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +2
Query: 257 SSPYQDSPQSIGFSATISAPHMHAHALEKL--KNQLV-PGEKALDVGSGSGYLTACMAMM 427
S+P + + ++ S SA + +EK+ ++QL PG+ +D+G G + A
Sbjct: 37 SNPPKKTKKNTLISLRKSAETANEKFIEKINKEHQLFKPGQIVVDLGCAPGIWSTIAARH 96
Query: 428 LGETGRVVGIEHI 466
+G GRV+ + I
Sbjct: 97 VGLFGRVIACDII 109
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 281 QSIGFSATISAPHMHAHALEKLKNQLVPGEKALD---VGSGSGYLTACMAMMLGETGRVV 451
QS G S I A +H + N G + + +G G T+C+A+M G+T +V+
Sbjct: 17 QSKGASFKIGAS-LHGSRMTARWNSNASGNEKVKGPVIGIDLGTTTSCLAIMEGQTPKVI 75
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 462 IYQNL*IWQPKTSKMTTQAYSHLRGLNL*LVMVVSVIH-LKPLTVQFMSGL 611
+Y NL +P + + Q Y HL G V+ + P+ VQFM G+
Sbjct: 423 LYMNLAFVEPSSKLLEDQTYLHLFGSIYNSFREERVMFWIFPIAVQFMRGI 473
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 656 PVSIDQLELVVKWELQPRHELHCKG 582
P++ + +LVV++E+ P L+C G
Sbjct: 110 PINEPEKDLVVQYEVNPEEGLNCGG 134
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 2 GRPMTFIKLPPLTIEGII*TLMKNKYTWIRNI 97
G+P ++ L P+ I + T+ NKY+W RN+
Sbjct: 243 GQPRGYVLLEPMHIPLGVLTVGLNKYSW-RNV 273
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 507 SFWMFLVAKFTSSDICSIPTTLPVSPNIMAIQAVR*PDPEPTSKAFS 367
SF LV K + D+ P S I + + P PEPT A S
Sbjct: 862 SFNKPLVEKESKQDVSDTSDRSPFSFKAFGIDSKKSPTPEPTEMAES 908
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,048
Number of Sequences: 5004
Number of extensions: 76380
Number of successful extensions: 232
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -