Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O03
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   3.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   3.7  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   6.4  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 140 LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 244
           +V  TTIT +     +++ +T+  PM+ T  +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/76 (22%), Positives = 38/76 (50%)
 Frame = +2

Query: 290 KHLCY*FNKNILKNIMILLFISFEILINNFRGLLSIYKTPLFLSVFFSHVNYHFVNVCR* 469
           +++C    KN++ +++ +  IS EI       L + +K+   L VFF+ + +  + +   
Sbjct: 448 QYICLALAKNVVSHVLPVFEISCEIFWLILSELKNFFKSE--LEVFFTEIFFPILEM--- 502

Query: 470 DSRGTNHESVFLFDIF 517
               +N + + L +IF
Sbjct: 503 -RTSSNQQKIVLLNIF 517


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 332 IMILLFISFEILINNFRGLLSIYK 403
           ++ LL +  +I   NFRG LSIY+
Sbjct: 328 VVALLLMQHKISNGNFRGALSIYQ 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,894
Number of Sequences: 5004
Number of extensions: 27849
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)