Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O02
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.30 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 185 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELSIGSMRFTTFD 349
           L K+   +  +G  + GKTTLL  L++  +A+         +      L  G  R T  D
Sbjct: 141 LIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQCIGAFDVTLESGE-RVTFLD 199

Query: 350 LGGHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNK 529
             GH     +        D +V +V A D  +  E   +   +  D   +  P+++  NK
Sbjct: 200 TPGHAAFISMRHRGAHITDIVVLVVAADDGVK--EQTLQSIEMAKD---AKVPIIVAINK 254

Query: 530 IDKP 541
           IDKP
Sbjct: 255 IDKP 258


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 425  DACDRPRLPESKAELDSL 478
            D  DRP L E++ ++DSL
Sbjct: 1877 DRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 425  DACDRPRLPESKAELDSL 478
            D  DRP L E++ ++DSL
Sbjct: 1873 DRSDRPELSEAECDIDSL 1890


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 537 NPVLPVKTNYVTFSICIS 590
           NP +   TNY  FS+ IS
Sbjct: 68  NPAMQTATNYYLFSLAIS 85


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 761 CIFTKTDTLFYNFIHEKYIP 820
           C+F  TD + Y+ +   YIP
Sbjct: 336 CLFYNTDFIIYSSLSSFYIP 355


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 5/23 (21%), Positives = 17/23 (73%)
 Frame = -2

Query: 69  LFVICYVVKWIISLANDYCDETV 1
           +F+IC++  ++++L + +C + +
Sbjct: 343 VFIICWLPFFVVNLWSGFCSQCI 365


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 69  LFVICYVVKWIISLANDYC 13
           +F+IC+V  + +++   YC
Sbjct: 280 VFLICWVPFFCVNIVTSYC 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,146
Number of Sequences: 438
Number of extensions: 4752
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)