Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_O01
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2... 28 1.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.6
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 27 2.2
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 2.9
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.8
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 5.0
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 6.6
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 6.6
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 25 8.7
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.7
>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 560 LIKILKRYCSLSIVNAVFIFFCECIYF 480
L I++ YC+ I N F C+C Y+
Sbjct: 62 LSAIVRFYCAYHITNPDVYFLCQCTYY 88
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +3
Query: 291 SDVNEMNKQNIIWTKNSTIMLLN-LYETKIHMLDNP-KKKSKMWISIAEELKSLN--VEV 458
+++ + N Q T+ ++N +E H++++ + + S+ EL LN VEV
Sbjct: 962 AELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEV 1021
Query: 459 TADQVRWKINALTKKYKDCIDNGQGAVSFK 548
++ L K+ +D + A+SFK
Sbjct: 1022 LKEEKESSSKELAKQLEDAVREKDSALSFK 1051
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 388 SNICILVSYKFSNIIVEFFVQMIFCLFISFTS 293
+N+ + SYK I+ + M FCLF+S ++
Sbjct: 515 NNLLFMNSYKMKLSIILGVIHMTFCLFLSLSN 546
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 255 YNHNQNISQQEESDVNEMNKQNI 323
YN + ++ EES+V+ NKQN+
Sbjct: 495 YNSSTSLDSSEESEVDVENKQNV 517
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 204 ILDSQPNLYKPNMPVPTYNHNQNISQQEESDVNEM 308
+L S PN Y P +P P +H+ ++ E+S ++ +
Sbjct: 220 LLKSYPNAYVPRLP-PKDDHDTYLNSSEDSTLSPL 253
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 537 VSFKYFNEMHQILGRYNDNGGNYRLASGVIQEDAEKSKDR 656
+SF N++ +L + GNY AS ++ D E ++R
Sbjct: 846 ISFFEANDLLNLLWIFEAQNGNYGRASEILFRDCEPEENR 885
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -2
Query: 299 YIRFFLLANVLIVIVCWNWHIWFVQIRLTIE 207
Y+ FF ++ + + W++W ++ LT+E
Sbjct: 247 YVGFFTFLSIGLSVCLELWYLWDIKTGLTVE 277
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 248 NWHIWFVQIRLTIENS*DRYIVMNVFIHFDLDINLIRPF 132
N H+ F + I R + MNV I FD N I+PF
Sbjct: 235 NTHVRFPTLTANIRQRRGRKVAMNVPIFFDK--NTIKPF 271
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 315 QNIIWTKNSTIMLLNLY 365
QN++WT STI ++ L+
Sbjct: 297 QNLVWTNQSTIPMMTLH 313
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 98 VNYSPSFYTVSYFDHFTFL*NTK 30
VNYS +++ V +HF F+ +T+
Sbjct: 1344 VNYSKNWWNVKILEHFDFILDTE 1366
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 159 IKMDENIHNNVAVLAILDSQPNLYKPNMP 245
+K ++NIH+N LAI ++ + +K + P
Sbjct: 22 LKFNKNIHSNPDFLAIAENWKSYWKSHYP 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,025
Number of Sequences: 5004
Number of extensions: 62556
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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