Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_O01
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.76 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.1  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.3  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 276 SQQEESDVNEMNKQNIIWTKNS 341
           SQ + ++V+   K+NI+WT+ S
Sbjct: 284 SQYQANNVHYQGKENILWTQAS 305


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 255 YNHNQNISQQEESDVNEMNKQN 320
           YNHN N ++      N+ N Q+
Sbjct: 425 YNHNHNQARHSSKSDNQNNNQH 446


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 308 HFIYIRFFLLANVLIVIVCWNWHI 237
           HF++I F  LAN   +   ++W++
Sbjct: 3   HFLWIVFLALANGEEIKTIYSWNV 26


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 555 NEMHQILGRYNDNGGNYRLASGVIQEDAEKSKDRKN 662
           N+  Q   R NDN  N    +G  Q D +++ +R+N
Sbjct: 476 NDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQN 511


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 576 GRYNDNGGNYRLASGVIQEDAEKSKDRKNLMKTTTP 683
           G  N N  N+R+ +G++ E    +K   +L+    P
Sbjct: 387 GTLNSNETNFRIQAGLVDELVRGTKCDVSLLGRFIP 422


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 423 IAEELKSLNVEVTADQVRWKINALTKKYKDCIDNG 527
           I +E+ + NV V  + V+  +  + KK+    +NG
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENG 77


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 348 MLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVR 476
           +L +L   K+H      KKSK   ++A  ++S ++  + D  R
Sbjct: 356 LLNDLAAHKMHGRGRSGKKSKFNAAVAAAVQSSSIVSSPDSAR 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,627
Number of Sequences: 438
Number of extensions: 4311
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)