Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N23
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 96 4e-21
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 32 0.11
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 1.00
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 28 1.3
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 3.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 4.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 7.0
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 25 9.3
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.3
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 96.3 bits (229), Expect = 4e-21
Identities = 61/180 (33%), Positives = 95/180 (52%)
Frame = +1
Query: 238 TENEDHQYEQNVKDVILERALEFVSQTGWSVESLSAGAKSAGYPTITHGLFPNGGGDLIH 417
+EN + K +ILE ALE V Q G++ +++ G ++ GY ++ LFP+G DLI
Sbjct: 36 SENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSNLSKALFPSGPMDLIS 95
Query: 418 YFNIKCNQQLAEQMKLWPQEDLKGGLKVPAKFIENAIVTRLLMIKPYKSTWPKAMAIQTL 597
YF +K L+ L P L + + ++ I +RL + P+ +AI T
Sbjct: 96 YFFLKQRYALSS---LKPH--LTTIPETSGRVVQ-LIWSRLQGNRDIVQHLPQMIAICTY 149
Query: 598 PNNVPNGLATLLSLVDDICYHSGDRSVDFNWYIRRVGLAGIYKAAELFYLTDNSQXNNAT 777
P+N+ L++L L D+I Y + D+S DF WY +R ++ IY A+ELF D S AT
Sbjct: 150 PSNLRKSLSSLAELSDEILYLAQDKSADFQWYTKRAAISAIYSASELFMSRDTSPNFEAT 209
>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 103
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 436 NQQLAEQMKLWPQEDLKGGLKVPAKFIENAIVTRLLMIKPYKSTWPKAMAIQTLPNNV 609
NQ++ + + LWP+++L+ L P K ++ +I RL + P ++ + A+ L +NV
Sbjct: 4 NQKITKAVALWPKDELRPWLSFP-KTLDTSIRARLQKMPPQQAN-KQLNALNNLLDNV 59
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.00
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 136 ILPLSSVNIRNIQGTVKDYNHSEVRTDIKIASVVTEN 246
+LP+ S +R+ ++ D +H ++RT+ + V EN
Sbjct: 303 VLPMFSAKLRDYTQSLFDSSHIKIRTNTALKKVTAEN 339
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 406 DLIHYFNIKCNQQLAEQMKLWPQEDLK 486
DL+ YF N L + LWP +DL+
Sbjct: 925 DLMSYFGFAKNSDLQQWNGLWPSDDLR 951
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 412 IHYFNIKCNQQL---AEQMKLWPQEDLKGGLKVPAKFIENAIVTRLLMIKPYKSTWPKAM 582
IH +I N+QL EQ K P E LK+ N V L+ + +S + +
Sbjct: 288 IHDHHIINNEQLIDLTEQEKKQPNESNLSNLKIETVLFSNCTVFLLIDTREIRSPLDRNL 347
Query: 583 AIQTLPNN 606
I L N+
Sbjct: 348 IIDKLTND 355
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +1
Query: 73 RHWNMSNLQKILRLFRTQHRFILPLSSVNIRNIQGTVKDYNHSEVRTDIKIASVVTENED 252
R + + NL+K L RT F+L ++ RN DY H + K + + + D
Sbjct: 149 RDFYIKNLEKTEDLIRTDSHFVLNKELLSFRN------DYEHRRKHYE-KYSQCLNKQLD 201
Query: 253 HQYEQNVKDV 282
H + V V
Sbjct: 202 HFFSYKVTTV 211
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 367 DSQLILHLHSKTLLTI 320
DSQL LHLHS+ + T+
Sbjct: 271 DSQLFLHLHSRIVQTL 286
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 55 YFTFNRRHWNMSNLQKILRLFRTQHRFILPLSSVNIRNIQ 174
+F N R +NM K+L + +H F PLS +++
Sbjct: 86 HFMSNERFFNMDVAGKVLEIHEAKHGF-YPLSETRTMHVR 124
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 202 EVRTDIKIASVVTENEDHQYEQNVKD 279
E + ++TE DH +EQ +KD
Sbjct: 195 ETGLSVTAIPIITETLDHAHEQEIKD 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,807
Number of Sequences: 5004
Number of extensions: 60830
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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