Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N23
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966     31   1.0  
03_06_0180 + 32175658-32178145,32178765-32178808                       30   1.8  

>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
          Length = 766

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 586 IQTLPNNVPNGLATLLSLVDDICYHSGDRSVDFN-WYIRRVG 708
           ++ L  ++P G A + + +   CY++  R +D+N W I   G
Sbjct: 92  VEVLSISLPTGQARVTNSISSACYNTSSRDMDYNDWQINFTG 133


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 673 SVDFNWYIRRVGLAGIYKAAELFYL 747
           ++ +NW IR + +AG Y++A LFYL
Sbjct: 109 ALPWNWLIRGLTMAGDYRSALLFYL 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,452,844
Number of Sequences: 37544
Number of extensions: 363357
Number of successful extensions: 834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)