Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N22
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0619 + 26652923-26653267,26653440-26654273 55 4e-08
01_01_1152 + 9170628-9171899 51 9e-07
11_01_0767 + 6438648-6438809,6439146-6440000 45 5e-05
11_01_0771 + 6453130-6454488 45 6e-05
02_04_0572 + 23972319-23973683 32 0.34
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 31 0.60
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 1.1
03_05_0294 + 22855503-22855946,22856346-22856399 30 1.8
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 29 3.2
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 29 3.2
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 29 4.2
02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077 28 5.6
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 28 7.4
06_03_0682 + 23487507-23487686 28 7.4
05_06_0044 - 25150322-25151260 28 7.4
02_02_0422 + 10053666-10053684,10054178-10054426,10054552-10055045 27 9.8
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 55.2 bits (127), Expect = 4e-08
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = +1
Query: 160 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 339
+ SP G+ + +A G G + RQL AF+ ++ I + + +L + L
Sbjct: 23 MFSPLGLRAGLALLATGTDGETLRQLL-AFLGSQH----IHQLNAASAGLLAEMRAWPQL 77
Query: 340 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYIEKS-GGRVSN 510
+F+D L P F++T GA + +DF + +A A N +I ++ GR++N
Sbjct: 78 SFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137
Query: 511 VLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNE 633
+ F S + +L N + FK WG F DT+ F+ +
Sbjct: 138 TISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQ 179
>01_01_1152 + 9170628-9171899
Length = 423
Score = 50.8 bits (116), Expect = 9e-07
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Frame = +1
Query: 160 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 339
++SP + +A GA G + R+L P +L E ++S T ++ + + +
Sbjct: 62 IVSPLSFHAALALVADGARGETQRELLGFLGSP----SLAELHRSPTTRLVARLRHLPNT 117
Query: 340 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFS-DPNSARI-ANTYI-EKSGGRVSN 510
V++D L P F + A + DF+ P AR N ++ + + G + +
Sbjct: 118 SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRD 177
Query: 511 VLRSDDFQESRLI-LTNVISFKGLWGLPFNKSDTELEPFY 627
VL + S ++ L N + FKG W LPF+ S T PF+
Sbjct: 178 VLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFH 217
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 45.2 bits (102), Expect = 5e-05
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Frame = +1
Query: 304 VVLDQTANGVSLVSRNF-VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSD-PNSARIA-N 474
V+ DQ G VS +LD ++L PA+R + + + +DF + P AR N
Sbjct: 4 VLADQAPTGGPCVSFACGSWLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEIN 63
Query: 475 TYIEKSGGR-VSNVLRSDDFQ-ESRLILTNVISFKGLWGLPFNKSDTELEPF 624
++ ++ ++ V++ + ++R ++ N I FKG W PF+KSDT F
Sbjct: 64 AWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREF 115
>11_01_0771 + 6453130-6454488
Length = 452
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 535 ESRLILTNVISFKGLWGLPFNKSDTELEPFY 627
E+ ++L N I FKG W PFN+SDTE +PFY
Sbjct: 201 ETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>02_04_0572 + 23972319-23973683
Length = 454
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 344 AGTLSSWTTISPYCR----PSGRRSRRISVLRL 430
AG LSSW +P+CR GRR R++ L L
Sbjct: 47 AGVLSSWNKTTPFCRWNGVKCGRREHRVTALEL 79
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 472 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFY 627
N+++EK + G + +L + RL+L N + FKG W F+ S T+ F+
Sbjct: 218 NSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFH 271
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 204 SDSRHQSPYPKRRDHNVPISLSL 136
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +1
Query: 154 HVVISPFGIWTLMTGIALGASGNSYRQLSRAFILP-KNPATLIEGY-KSLTDVVLDQT-- 321
+V SP + ++ +A GA G + QL +P + A + + + + +VL +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 322 ANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF 444
A G + + VF+D+ +L+ +F+ + A +DF
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -3
Query: 431 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 276
++E S SV + G+ +K + ++TKFRL + D P+ S SV +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 261 KSGNAYRRVQIPDGRGARSDRERSIPGQPELCLL 362
KSG+ Y DG G++ RERS P P CL+
Sbjct: 236 KSGHHYIPCVDFDGDGSQRHRERSCPRLPATCLV 269
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 472 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTE 612
N+++++ + G + +L + RL+L N + FKG W F+ S T+
Sbjct: 10 NSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTK 58
>02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077
Length = 369
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Frame = +3
Query: 237 EQSVYFAQKSGNAYR----RVQI---PDGRGARSDRERSIPGQPE 350
E+++Y K+ N YR RV+ P +G ++ R IPGQPE
Sbjct: 135 EEAIYMGNKNNNGYRLSGGRVRNQPRPYYQGVPANEFRRIPGQPE 179
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 407 WSVVLKAGNKVKSLSKKTKFRLTRD 333
W ++ GN+V S+ K KFR RD
Sbjct: 57 WIGIICTGNRVTSMLKTVKFRTVRD 81
>06_03_0682 + 23487507-23487686
Length = 59
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 211 ASGNSYRQLSRAFILPKN-PATLIEGYKSLTDVVLDQTANGVSLV 342
A+G L++ LP P+T IE YK +V L +GV+++
Sbjct: 13 AAGGMRHDLTQTVALPCAWPSTTIEAYKKTPNVELQDQVSGVNML 57
>05_06_0044 - 25150322-25151260
Length = 312
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Frame = +1
Query: 355 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIANTYIEKSGGRVSNVLRS--DD 528
V++D L PAF T F A+++ A I + ++GG V ++L + DD
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRSAGNPAAARAEINEWFSSQTGGFVKDILSNSIDD 62
Query: 529 FQE----------SRLILTNVISFKGLWGLPFNKSDTELEPFY 627
+ + + L N + F W PF TE F+
Sbjct: 63 DDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFH 105
>02_02_0422 + 10053666-10053684,10054178-10054426,10054552-10055045
Length = 253
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 255 AQKSGNAYRRVQIPDGRGARSDRERSIPGQPELCLLGQRFH 377
A K G + V P+GRG R+ PG+ + + G+ H
Sbjct: 39 ASKGGERLQYVSPPNGRGRPHRRDGGAPGKDFIFINGEYVH 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,806,289
Number of Sequences: 37544
Number of extensions: 389716
Number of successful extensions: 1006
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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