Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N16
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...   133   2e-32
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    29   0.81 
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   2.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.3  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    25   10.0 

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score =  133 bits (322), Expect = 2e-32
 Identities = 60/129 (46%), Positives = 88/129 (68%)
 Frame = +3

Query: 288 KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPG 467
           ++AFF+ H+MV +PE++I  +ADAG + + FH E  +   E+  +  E GM VG A+KP 
Sbjct: 63  EEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKPK 122

Query: 468 TPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPST 647
           TPV  +  ++   DMVL+MTVEPG GGQ FM   + KV++LR+ YP L++EVDGG+   T
Sbjct: 123 TPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKT 182

Query: 648 INCCANAGA 674
           ++  A+AGA
Sbjct: 183 VDAAADAGA 191



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +2

Query: 110 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFG 253
           ++A I PS+L  D + L +E  ++L  G+D+LH+DVMD QFVPNLT G
Sbjct: 2   VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIG 49


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 522 MTVEPGFGGQKFMENQMAKV-QYLRENYPLLDIEVDG 629
           + + PG G  ++M+  MAKV +Y R+N   + I+ DG
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADG 152


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 190 WSRLFTFRCNGWSVCT 237
           WSR F   C G+SVCT
Sbjct: 6   WSRNFLCSCRGFSVCT 21


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 365 DSSISHWCYPLLWFLNHHVSFKKGIFYFSSKALH 264
           D+ I +  YP    L+ H+S KK I YFS+K  H
Sbjct: 419 DNLIDNLKYPQS--LDDHLSSKKPISYFSNKLTH 450


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +2

Query: 95  KMTRHLKALIGPSILNADLSQLYEESQKLLD-NGADY----LHLDVMDGQFVPNLTFGH 256
           K   HLK +I  + LNA+  QLY E   L+   G  Y     +L+ +  QF  + +FG+
Sbjct: 779 KQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLEDILSQFGNDKSFGN 837


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 555 FMENQMAKVQYLRENYPLLDIEVDGGVG 638
           F +   +++Q L+E + LLD + DG +G
Sbjct: 39  FAQLTSSQIQELKEAFALLDKDGDGNIG 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,654
Number of Sequences: 5004
Number of extensions: 49638
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)