Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N16
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720... 139 2e-33
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369... 89 3e-18
05_01_0030 + 195663-196691 29 4.5
07_01_0587 - 4362843-4362977,4363072-4363131,4363228-4363305,436... 28 5.9
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 28 7.8
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481... 28 7.8
>09_04_0657 +
19271266-19271388,19271906-19271910,19272005-19272067,
19272150-19272256,19272321-19272418,19273070-19273162,
19273279-19273320,19273464-19273619
Length = 228
Score = 139 bits (337), Expect = 2e-33
Identities = 66/131 (50%), Positives = 92/131 (70%), Gaps = 4/131 (3%)
Frame = +3
Query: 294 AFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI-EVCRKVREHGMKVGVAIKPGT 470
A+ + H+MV P ++ P+A AG + +TFHIE +D E+ + ++ GM+ GV+++PGT
Sbjct: 65 AYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGT 124
Query: 471 PVSEVEKYISIS---DMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGP 641
PV EV + ++VL+MTVEPGFGGQKFM M KV+ LR+ YP LDIEVDGG+GP
Sbjct: 125 PVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP 184
Query: 642 STINCCANAGA 674
STI+ A+AGA
Sbjct: 185 STIDVAASAGA 195
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +2
Query: 116 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHP 259
A I PS+L++D + L E+ +++ GAD+LH+D+MDG FVPNLT G P
Sbjct: 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAP 54
>03_01_0485 +
3695857-3695951,3696489-3696597,3696746-3696886,
3696986-3697099,3697558-3697636,3698163-3698272,
3698344-3698400,3698520-3698609
Length = 264
Score = 89.0 bits (211), Expect = 3e-18
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Frame = +3
Query: 285 IKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVCRKVREHGMKVGVAI 458
+ D + H+M+ +PEQ + AG + + H E + +++ G K GV +
Sbjct: 106 VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVL 165
Query: 459 KPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLR----ENYPLLDIEVD 626
P TP++ ++ + + D+VLIM+V PGFGGQ F+E+Q+ K+ LR E IEVD
Sbjct: 166 NPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVD 225
Query: 627 GGVGPSTINCCANAGA 674
GGVGP AGA
Sbjct: 226 GGVGPKNAYKVIEAGA 241
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/45 (48%), Positives = 35/45 (77%)
Frame = +2
Query: 119 LIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFG 253
++ PSIL+A+ S+L E+ + + G D++H+DVMDG+FVPN+T G
Sbjct: 52 IVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIG 96
>05_01_0030 + 195663-196691
Length = 342
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 544 PNPGSTVIIKTMSDIEIYFSTSETGVPGFIATPTFIPCSLTFLHTSITSLTGSI 383
P P S + ++ + I ++ VP F+A T SLT L S SLTG I
Sbjct: 118 PIPDSLAALTDLTHLTISWTAVSGPVPSFLANLT----SLTMLDLSFNSLTGLI 167
>07_01_0587 -
4362843-4362977,4363072-4363131,4363228-4363305,
4363552-4363629,4363950-4364026,4364416-4364590,
4364698-4364844,4365477-4365716
Length = 329
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +3
Query: 336 WITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV 515
++T + +AGV+ P+++ + + ++ +++ + P TP +EK S+
Sbjct: 177 FMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGF 236
Query: 516 LIMTVEPGFGGQKFMENQMAKVQYLRENY-PLLDIEVDGGVGPST 647
+ + G G + N KVQ L ++ + D V G G ST
Sbjct: 237 IYLVSTVGVTGAR--ANVSGKVQSLLQDIKQVTDKAVAVGFGIST 279
>04_03_1031 + 21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 122 IGPSILNADLSQLYEESQKLLDNGAD 199
I P L +S+LY+ KLLDN AD
Sbjct: 972 IAPPELQNTISELYDALVKLLDNNAD 997
>03_02_0898 -
12246747-12246833,12247425-12247601,12248054-12248176,
12248545-12248766,12249556-12249606,12249712-12249987
Length = 311
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 474 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTIN 653
+ E ++++ +L V GF G + N++ ++ L + LLD E+D G+ +
Sbjct: 188 IEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLD-EIDSGLDVDALE 246
Query: 654 CCANA 668
A A
Sbjct: 247 YVAKA 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,145
Number of Sequences: 37544
Number of extensions: 300534
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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