Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N16
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...   150   1e-36
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    31   0.75 
AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score =  150 bits (363), Expect = 1e-36
 Identities = 71/131 (54%), Positives = 89/131 (67%), Gaps = 3/131 (2%)
 Frame = +3

Query: 291 DAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD---VIEVCRKVREHGMKVGVAIK 461
           + FF+ H+MV  P QW+ PMA AG +Q+TFH E V     V E+  K+R+ GMKVG+++K
Sbjct: 64  EPFFDVHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVGLSVK 123

Query: 462 PGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGP 641
           PGT V  + K+ +  D  LIMTVEPGFGGQKFMEN M KV+ +R  YP L I+VDGGV P
Sbjct: 124 PGTSVEHILKHANHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQVDGGVTP 183

Query: 642 STINCCANAGA 674
             I   A AGA
Sbjct: 184 ENIEISAQAGA 194



 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = +2

Query: 110 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPXSE 268
           L+  + PSILNADL+ L  E +KLL  GAD+LHLDVMDG FVPNLTFGHP  E
Sbjct: 3   LRPFVCPSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVE 55


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 544 PNPGSTVIIKTMSDIEIYFSTSE-TGVPGFIATPTFIPCSLTFLH 413
           P+P +  II +M  +EI FS    TG   F   P+FI  S+ FLH
Sbjct: 5   PSPPAP-IITSMETVEIEFSAKVFTGFQLFYGVPSFIIMSVLFLH 48


>AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical
           protein C02A12.8 protein.
          Length = 658

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -2

Query: 443 LHSVLSNFSAHFYYIFDRFYMKCVLIDSSISHWCYPLLWFLNHHVSFKKGIFYFSSKALH 264
           +H  L  +   F  I   +Y+   LI   +  W   +LW  N+  S    +   +   +H
Sbjct: 56  IHDFLRFYYRRFRRILPLYYLTIFLIVVMVHQWLPYILWDNNYRYSIASLLLITNQLVIH 115

Query: 263 XQGD 252
            Q D
Sbjct: 116 DQAD 119


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 357 AGVNQYTFHIEPVKDVIEVCRKVRE 431
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 357 AGVNQYTFHIEPVKDVIEVCRKVRE 431
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,476
Number of Sequences: 27780
Number of extensions: 285501
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)