Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N15
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    29   0.64 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    29   0.85 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   1.1  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    27   3.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   4.5  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   6.0  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   7.9  

>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 180 ILKGSSXATPRCSMPS--TNIGMGA*ADALRHFEAAD 76
           I++ SS  TP    PS  T IG G  A  + HF+AAD
Sbjct: 383 IIRSSSSVTPLQLDPSELTAIGSGVQASLIGHFDAAD 419


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = -1

Query: 655  NNLSGYSVHYWRSYFEDD---LVSAGRY*LFSCLGENIIPVKQIVKFQGRLIFELVIMVP 485
            N LSG +V ++  + EDD   L+ A ++  F C+ ++I  +    KF+ + +    I   
Sbjct: 859  NELSGKNVLFFY-FLEDDSEKLLKACQH--FICVKDSIKRLGDN-KFEDKSLRICTIPNS 914

Query: 484  VFHRPMLNTIRT-SFYAKISFD*YLNLP 404
            +F  P  +T  + SF+ K+S D Y N P
Sbjct: 915  IFDSPNSHTTNSNSFFTKVSLDIYNNDP 942


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +2

Query: 242  GLRNTVVKKIRRNKLKSKLSITLLCSVDLEGEYELDGQLLILPIRGKGRLHAALRKVQIS 421
            G  N +++++   KLK  L+     S  +   YE+   L++     K  L+ AL  V  +
Sbjct: 839  GSDNDLIRRLFSGKLKQTLNDA---SQGVRSNYEIFSHLIVDLFEEKQTLYDALDGVFET 895

Query: 422  VEADLGVET 448
            V  D+G ET
Sbjct: 896  VNIDMGSET 904


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 652 NLSGYSVHYWRSYFEDDLVSAGRY*LFSCLGENI 551
           ++S Y+VH WRS+F   LV          +GENI
Sbjct: 547 DISTYNVHQWRSHF--GLVGQEPVLFSGTIGENI 578


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 483 SFTVQC*TPSAPVSTP 436
           +FT+Q  TPS PVSTP
Sbjct: 113 NFTLQFTTPSGPVSTP 128


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +2

Query: 494 NYQLKDQSTLELDNLFDGNDVLAQAAKQLIATSGNEIILEVGSPIVNAIATKIVENVKNF 673
           N Q+ +++ + L N++   D   +   Q    +     LE+G P  N+   K+V++  + 
Sbjct: 37  NAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQ 96

Query: 674 FK 679
           +K
Sbjct: 97  YK 98


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 350 HPVRIPLQGQPNIEALWIVSTSICFAVSFSQQY 252
           HP+ I +       + W  +TSIC   +  +QY
Sbjct: 21  HPINILIDNPHQANSRWSCNTSICKPNNSEEQY 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,869
Number of Sequences: 5004
Number of extensions: 50167
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)