Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N15
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886...    31   0.88 
02_02_0010 - 6077666-6077756,6078017-6078108                           28   6.2  

>04_03_0283 +
           13887388-13887573,13887711-13887806,13888517-13888637,
           13888734-13888840,13888949-13889166,13890219-13890396,
           13890492-13890611,13891601-13891687,13892401-13892511,
           13892618-13893439
          Length = 681

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 254 TVVKKIRRNKLKSKLSITLLCSVDLEGEYELDGQLLILPIRGKGRLHAALRKVQISVEAD 433
           TVVKKI R K++   S    C + +E    L  Q+  L   G   +   L  +  S+E D
Sbjct: 400 TVVKKIARKKIR---SFQEFCDMPVEERATLLTQVAGLSDEGAQDVELVLEMIP-SIEVD 455

Query: 434 LGVET-GADGVQHWTV 478
           +  ET G +G+Q   V
Sbjct: 456 IKCETEGEEGIQEGDV 471


>02_02_0010 - 6077666-6077756,6078017-6078108
          Length = 60

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 7   FLFALLFCVCSTFGCRSI--HSKXCICC 84
           FL+A LF +C  F C     H   C CC
Sbjct: 27  FLYACLFMLCCCFCCYETCEHCLECFCC 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,750
Number of Sequences: 37544
Number of extensions: 308257
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)