Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N15
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY187042-1|AAO39756.1|  248|Anopheles gambiae putative antennal ...    63   9e-12
AY187041-1|AAO39755.1|  272|Anopheles gambiae putative antennal ...    42   1e-05
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   5.3  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.2  

>AY187042-1|AAO39756.1|  248|Anopheles gambiae putative antennal
           carrier protein TOL-2 protein.
          Length = 248

 Score = 62.9 bits (146), Expect = 9e-12
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 6/197 (3%)
 Frame = +2

Query: 128 FVEGIEHLGVAXLDPFNIKYLXAXSQXXXXXXXX----VTARGLRNTVVKKIRR-NKLKS 292
           F  G+  LG+A LDP  I  +                 V   G ++  VKK +   +  +
Sbjct: 48  FQGGVPALGLASLDPLRIDEMDIVQGTGPVNIVLNFKNVDITGFKDVAVKKAKGFTETPN 107

Query: 293 KLSITLLCSV-DLEGEYELDGQLLILPIRGKGRLHAALRKVQISVEADLGVETGADGVQH 469
            + + L   V  L G Y++ G++LILPI+G+G  +  +      ++ +  +E  A+G ++
Sbjct: 108 VMEMNLRLPVASLVGSYKIKGKVLILPIQGEGTSNMTMVNCDFLMKWNGALEKRANGKEY 167

Query: 470 WTVKDWNHNYQLKDQSTLELDNLFDGNDVLAQAAKQLIATSGNEIILEVGSPIVNAIATK 649
           + +      +    +  + L NLF+G+  L     Q +  +  +I+ E+   I+ A    
Sbjct: 168 YQMNKIKATFD-TTRFYMHLTNLFNGDKALGDNMNQFLNDNWEDILKELKPAIIGAFTKI 226

Query: 650 IVENVKNFFKNVPXTEL 700
               + N F+NVP  EL
Sbjct: 227 FRAIITNVFENVPYEEL 243


>AY187041-1|AAO39755.1|  272|Anopheles gambiae putative antennal
           carrier protein TOL-1 protein.
          Length = 272

 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 5/191 (2%)
 Frame = +2

Query: 131 VEGIEHLGVAXLDPFNI-KYLXAXSQXXXXXXXXVTARGLRNTVVKKIRRNKLKSKL--- 298
           +EG+EH+G   +DP  I K               ++   +      K+ RN + SK    
Sbjct: 72  IEGLEHVGT--IDPMKISKIRILQGDGPVSVNASLSKVVVTGFASTKVLRNVVSSKNFGW 129

Query: 299 -SITLLCSVDLEGEYELDGQLLILPIRGKGRLHAALRKVQISVEADLGVETGADGVQHWT 475
            +   L  + LEG Y + G++L++P+ G G+       + I +     +    +G   + 
Sbjct: 130 ETHIRLPKMRLEGNYHMQGRILVIPLNGHGKCWFEPSGMDIIMRTSTDLYQ-KNGHVFYN 188

Query: 476 VKDWNHNYQLKDQSTLELDNLFDGNDVLAQAAKQLIATSGNEIILEVGSPIVNAIATKIV 655
           V     +Y +     L + NLF+G  VL  +  Q +  +   +   +   I   I   ++
Sbjct: 189 VTGTKVDYTISG-LRLHMGNLFEGVKVLEDSTNQYLNDNWRPVSEALKPIIAKTIEDILL 247

Query: 656 ENVKNFFKNVP 688
             ++N F  +P
Sbjct: 248 AIMQNIFHQLP 258


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 280 VSPYLFHNSISESSCSNXFQNQFQK 206
           V+PY +HN +  S+ +N F  + Q+
Sbjct: 241 VAPYGYHNLMPLSTDANLFSQEVQR 265


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 338 IPLQGQPNIEALWIVSTSICFAVSFSQQYF 249
           +PL G+  I A+ +VS SIC  V     +F
Sbjct: 303 VPLLGKYLIFAMILVSISICVTVVVLNVHF 332


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 338 IPLQGQPNIEALWIVSTSICFAVSFSQQYF 249
           +PL G+  I A+ +VS SIC  V     +F
Sbjct: 303 VPLLGKYLIFAMILVSISICVTVVVLNVHF 332


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,529
Number of Sequences: 2352
Number of extensions: 11539
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)