Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N15
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    40   2e-05
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
 Frame = +2

Query: 320 VDLEGEYELDGQLLILPIRGKGRLHAALRKVQISVEADLGVET-GADGVQHWTVKDWNHN 496
           VD   +Y+++G++L+LP+RG G+ +  +    +    D+  E    +G  +  +K   H 
Sbjct: 125 VDFVADYKIEGKVLLLPVRGAGKSNITM--YDLKSHNDIYCEKYEKNGETYLRIK--KHA 180

Query: 497 YQLKDQST-LELDNLFDGNDVLAQAAKQLIATSGNEIILEVGSPIVNAIATKIVENVKNF 673
            +       L  +NLFDGN  L +   + I  +   +  E+ +      +    +     
Sbjct: 181 VKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEI 240

Query: 674 FKNVPXTEL 700
           F  VP  ++
Sbjct: 241 FNRVPFDKI 249


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 338 IPLQGQPNIEALWIVSTSICFAVSFSQQYF 249
           +PL G+  I A+ +VS SIC  V     +F
Sbjct: 304 VPLLGKYLIFAMILVSISICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 338 IPLQGQPNIEALWIVSTSICFAVSFSQQYF 249
           +PL G+  I A+ +VS SIC  V     +F
Sbjct: 304 VPLLGKYLIFAMILVSISICVTVVVLNVHF 333


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor
          protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 4  IFLFALLFCVCSTF 45
          IF+FALL  +C+ F
Sbjct: 5  IFIFALLATICAAF 18


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 497 NYGSSLSPSNVEHHPH 450
           N  SSL PS   HH H
Sbjct: 274 NPNSSLQPSLASHHSH 289


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 242 GLRNTVVKKIRRNKLKSKLSITL 310
           GLRNT + +   NKL++ L   L
Sbjct: 352 GLRNTELVERMHNKLRNALQTVL 374


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 90  NASKHLLKRPYRYLSKASSIL 152
           NASKH  KRP  ++S  S ++
Sbjct: 751 NASKHSAKRP-SFISPRSQLI 770


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 519 PWNLTICLTGM 551
           PW L+ICL G+
Sbjct: 6   PWLLSICLFGL 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,233
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)