Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N14
(782 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56273 Cluster: PREDICTED: hypothetical protein;... 167 4e-40
UniRef50_Q4RIW6 Cluster: Chromosome undetermined SCAF15041, whol... 113 5e-24
UniRef50_Q9C0F7 Cluster: KIAA1706 protein; n=29; Euteleostomi|Re... 98 2e-19
UniRef50_UPI0000584CEA Cluster: PREDICTED: similar to KIAA1706 p... 95 2e-18
UniRef50_A6LNS9 Cluster: Competence protein ComEA helix-hairpin-... 71 4e-11
UniRef50_Q67SA3 Cluster: Putative DNA-binding protein; n=1; Symb... 59 1e-07
UniRef50_Q1D6Q9 Cluster: ComE protein; n=2; Cystobacterineae|Rep... 59 1e-07
UniRef50_Q8XIJ9 Cluster: ComE operon protein; n=3; Clostridium p... 58 2e-07
UniRef50_Q5KWY4 Cluster: Late competence protein; n=2; Geobacill... 58 2e-07
UniRef50_A7HNQ6 Cluster: Competence protein ComEA helix-hairpin-... 58 2e-07
UniRef50_Q3XYU3 Cluster: Competence protein ComEA helix-hairpin-... 58 3e-07
UniRef50_Q6F851 Cluster: Putative DNA uptake protein and/or rela... 57 4e-07
UniRef50_A5D3Z2 Cluster: Hypothetical membrane protein; n=1; Pel... 57 6e-07
UniRef50_A3IF87 Cluster: Competence protein comEA; n=1; Bacillus... 57 6e-07
UniRef50_Q1PW28 Cluster: Putative uncharacterized protein; n=1; ... 56 8e-07
UniRef50_Q831Q1 Cluster: Competence protein comEA; n=1; Enteroco... 56 1e-06
UniRef50_Q0EYL1 Cluster: Late competence protein required for DN... 56 1e-06
UniRef50_Q70T35 Cluster: ComEA protein; n=2; Bacillus|Rep: ComEA... 55 2e-06
UniRef50_Q182I3 Cluster: Putative competence protein precursor; ... 55 2e-06
UniRef50_Q8FN96 Cluster: Putative uncharacterized protein; n=1; ... 54 3e-06
UniRef50_Q2ACP1 Cluster: Competence protein ComEA helix-hairpin-... 54 3e-06
UniRef50_Q03JE8 Cluster: DNA uptake protein or related DNA-bindi... 54 3e-06
UniRef50_A3DET3 Cluster: Competence protein ComEA helix-hairpin-... 54 3e-06
UniRef50_A4EC57 Cluster: Putative uncharacterized protein; n=1; ... 54 5e-06
UniRef50_Q15QY4 Cluster: Competence protein ComEA helix-hairpin-... 53 7e-06
UniRef50_A4J7G9 Cluster: Competence protein ComEA helix-hairpin-... 53 7e-06
UniRef50_Q483A1 Cluster: ComE domain protein; n=1; Colwellia psy... 53 9e-06
UniRef50_Q03F17 Cluster: DNA uptake protein related DNA-binding ... 53 9e-06
UniRef50_A0KYK0 Cluster: Competence protein ComEA helix-hairpin-... 53 9e-06
UniRef50_Q8G4D7 Cluster: Putative uncharacterized protein; n=2; ... 52 1e-05
UniRef50_Q49Y31 Cluster: Putative DNA uptake protein and related... 52 1e-05
UniRef50_Q2BK91 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q1ETT2 Cluster: Competence protein ComEA helix-hairpin-... 52 1e-05
UniRef50_A4XAF1 Cluster: Competence protein ComEA helix-hairpin-... 52 1e-05
UniRef50_Q47IV8 Cluster: Competence protein ComEA helix-hairpin-... 52 2e-05
UniRef50_Q3AF21 Cluster: Competence protein; n=1; Carboxydotherm... 52 2e-05
UniRef50_Q38WQ9 Cluster: Putative bacterial type II secretion/co... 52 2e-05
UniRef50_Q1ZI08 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_A0Q1S7 Cluster: Competence protein; n=1; Clostridium no... 52 2e-05
UniRef50_Q5HNV7 Cluster: ComE operon protein 1, putative; n=2; S... 52 2e-05
UniRef50_Q3E1Z2 Cluster: Helix-hairpin-helix motif; n=1; Chlorof... 52 2e-05
UniRef50_Q5WHH4 Cluster: Late competence protein ComEA; n=1; Bac... 51 3e-05
UniRef50_Q9RIA7 Cluster: ComEA protein; n=24; Proteobacteria|Rep... 51 3e-05
UniRef50_A0H2U6 Cluster: Competence protein ComEA helix-hairpin-... 51 3e-05
UniRef50_Q9CER3 Cluster: Competence protein ComEA; n=3; Lactococ... 51 4e-05
UniRef50_Q8RB96 Cluster: DNA uptake protein and related DNA-bind... 51 4e-05
UniRef50_Q6HT65 Cluster: ComE operon protein 1; n=22; Bacillus|R... 51 4e-05
UniRef50_Q1QEJ7 Cluster: Competence protein ComEA helix-hairpin-... 51 4e-05
UniRef50_Q1NUX5 Cluster: Helix-hairpin-helix motif; n=1; delta p... 51 4e-05
UniRef50_O85197 Cluster: Competence protein; n=17; Streptococcus... 51 4e-05
UniRef50_A1S4Z4 Cluster: DNA uptake protein-related DNA-binding ... 51 4e-05
UniRef50_A1RL71 Cluster: Competence protein ComEA helix-hairpin-... 51 4e-05
UniRef50_A0LSY6 Cluster: Helix-hairpin-helix motif; n=1; Acidoth... 51 4e-05
UniRef50_P39694 Cluster: ComE operon protein 1; n=2; Bacillus|Re... 51 4e-05
UniRef50_Q82C63 Cluster: Putative exogenous DNA-binding protein;... 50 5e-05
UniRef50_Q47RQ3 Cluster: Helix-hairpin-helix DNA-binding, class ... 50 5e-05
UniRef50_UPI00015C4860 Cluster: hypothetical protein CCC13826_14... 50 7e-05
UniRef50_Q7UJD5 Cluster: Probable comEA-related protein; n=1; Pi... 50 7e-05
UniRef50_Q8VQ77 Cluster: Late competence protein ComEA; n=6; Bac... 50 7e-05
UniRef50_A6CQY2 Cluster: Late competence protein; n=1; Bacillus ... 50 7e-05
UniRef50_A0GZS8 Cluster: Helix-hairpin-helix motif; n=1; Chlorof... 50 7e-05
UniRef50_Q5XBA3 Cluster: COME operon protein 1; n=11; Streptococ... 50 9e-05
UniRef50_Q6M3A1 Cluster: Secreted DNA uptake protein or related ... 50 9e-05
UniRef50_A5CR90 Cluster: Putative uncharacterized protein; n=1; ... 50 9e-05
UniRef50_A4B044 Cluster: Late competence protein; n=1; Alteromon... 50 9e-05
UniRef50_A1UIX9 Cluster: Competence protein ComEA helix-hairpin-... 50 9e-05
UniRef50_A1TBZ2 Cluster: Competence protein ComEA helix-hairpin-... 50 9e-05
UniRef50_Q4L6U1 Cluster: Similar to late competence operon prote... 49 1e-04
UniRef50_Q9EYL7 Cluster: Competence protein 1; n=12; Listeria mo... 49 1e-04
UniRef50_Q04B44 Cluster: DNA uptake protein related DNA-binding ... 49 1e-04
UniRef50_A5UT74 Cluster: Helix-hairpin-helix motif precursor; n=... 49 1e-04
UniRef50_A3ZUV0 Cluster: Competence protein ComEA-related protei... 49 1e-04
UniRef50_Q8DV80 Cluster: Putative competence protein; n=1; Strep... 49 2e-04
UniRef50_Q3K1S5 Cluster: ComE operon protein 1, putative; n=10; ... 49 2e-04
UniRef50_Q2FGD4 Cluster: ComE operon protein 1; n=12; Staphyloco... 49 2e-04
UniRef50_A7I0K9 Cluster: ComE operon protein 1; n=2; Campylobact... 49 2e-04
UniRef50_A1HQZ8 Cluster: Competence protein ComEA helix-hairpin-... 49 2e-04
UniRef50_Q3A6K8 Cluster: DNA uptake/competence protein; n=1; Pel... 48 2e-04
UniRef50_Q2Y853 Cluster: Competence protein ComEA helix-hairpin-... 48 2e-04
UniRef50_Q1JY69 Cluster: Competence protein ComEA helix-hairpin-... 48 2e-04
UniRef50_A7JQX9 Cluster: Possible competence protein; n=1; Mannh... 48 2e-04
UniRef50_A6WDK9 Cluster: Competence protein ComEA helix-hairpin-... 48 2e-04
UniRef50_A1A1R1 Cluster: Putative uncharacterized protein; n=2; ... 48 2e-04
UniRef50_UPI00005876FC Cluster: PREDICTED: hypothetical protein;... 48 3e-04
UniRef50_Q2LTK2 Cluster: DNA-binding protein, ComEA family; n=1;... 48 3e-04
UniRef50_Q41FK3 Cluster: Competence protein ComEA helix-hairpin-... 48 3e-04
UniRef50_A6NW57 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_A6L0G4 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_Q9X0E2 Cluster: ComEA protein-related protein; n=2; The... 48 4e-04
UniRef50_Q8DGH8 Cluster: Tll2339 protein; n=9; Cyanobacteria|Rep... 48 4e-04
UniRef50_Q8DG32 Cluster: DNA uptake protein; n=11; Vibrio|Rep: D... 48 4e-04
UniRef50_Q7WGV0 Cluster: Putative uncharacterized protein; n=2; ... 48 4e-04
UniRef50_Q9EYM5 Cluster: Competence factor ComEA; n=3; Thermus t... 48 4e-04
UniRef50_Q1QVK1 Cluster: Competence protein ComEA helix-hairpin-... 48 4e-04
UniRef50_A4XKH1 Cluster: Competence protein ComEA helix-hairpin-... 48 4e-04
UniRef50_Q39UG7 Cluster: DNA uptake protein and related DNA-bind... 47 5e-04
UniRef50_Q2JDK7 Cluster: Helix-hairpin-helix DNA-binding, class ... 47 5e-04
UniRef50_A0RNB7 Cluster: Conserved domain protein; n=1; Campylob... 47 5e-04
UniRef50_Q1WU47 Cluster: ComE operon protein 1; n=1; Lactobacill... 47 5e-04
UniRef50_Q0LPE0 Cluster: Competence protein ComEA helix-hairpin-... 47 5e-04
UniRef50_A4F9N2 Cluster: Competence protein ComEA helix-hairpin-... 47 5e-04
UniRef50_A4AAS4 Cluster: Putative uncharacterized protein; n=1; ... 47 5e-04
UniRef50_A2UAV6 Cluster: Competence protein ComEA helix-hairpin-... 47 5e-04
UniRef50_Q92BM9 Cluster: ComEA protein; n=2; Listeria|Rep: ComEA... 47 6e-04
UniRef50_Q83MW2 Cluster: ComE operon protein 1-like protein; n=2... 47 6e-04
UniRef50_Q3IE25 Cluster: Putative uncharacterized protein; n=2; ... 47 6e-04
UniRef50_Q2RKY9 Cluster: Competence protein ComEA helix-hairpin-... 47 6e-04
UniRef50_Q1AVU6 Cluster: Competence protein ComEA helix-hairpin-... 47 6e-04
UniRef50_A7GY27 Cluster: Conserved domain protein; n=1; Campylob... 47 6e-04
UniRef50_Q8A1M0 Cluster: Putative uncharacterized protein; n=5; ... 46 8e-04
UniRef50_Q88VD0 Cluster: ComE operon protein 1; n=2; Lactobacill... 46 8e-04
UniRef50_Q6A9B7 Cluster: ComE operon protein 1; n=1; Propionibac... 46 8e-04
UniRef50_Q3WBP6 Cluster: Helix-hairpin-helix motif precursor; n=... 46 8e-04
UniRef50_Q1IVK9 Cluster: Putative uncharacterized protein precur... 46 8e-04
UniRef50_A7BDT8 Cluster: Putative uncharacterized protein; n=1; ... 46 8e-04
UniRef50_Q9KD84 Cluster: Late competence operon required for DNA... 46 0.001
UniRef50_Q1FL89 Cluster: Competence protein ComEA helix-hairpin-... 46 0.001
UniRef50_A0JX55 Cluster: Competence protein ComEA helix-hairpin-... 46 0.001
UniRef50_Q66DS9 Cluster: Possible DNA uptake protein ComEA relat... 46 0.001
UniRef50_Q55769 Cluster: ComE ORF1; n=1; Synechocystis sp. PCC 6... 46 0.001
UniRef50_Q0YG37 Cluster: Helix-hairpin-helix motif precursor; n=... 46 0.001
UniRef50_A5WC41 Cluster: Competence protein ComEA helix-hairpin-... 46 0.001
UniRef50_A4BM59 Cluster: Unspecific high-affinity DNA-binding pr... 46 0.001
UniRef50_Q60AS7 Cluster: Putative competence protein ComE; n=1; ... 45 0.002
UniRef50_Q5H3A8 Cluster: DNA transport competence protein; n=11;... 45 0.002
UniRef50_Q5FKS5 Cluster: Competence protein; n=4; Lactobacillus|... 45 0.002
UniRef50_Q4JLN0 Cluster: Lr0776; n=3; Lactobacillus reuteri|Rep:... 45 0.002
UniRef50_Q8Y8F9 Cluster: Lmo0945 protein; n=13; Listeria|Rep: Lm... 45 0.002
UniRef50_Q478W5 Cluster: Competence protein ComEA helix-hairpin-... 45 0.002
UniRef50_Q1CY14 Cluster: Competence protein comEA; n=1; Myxococc... 45 0.002
UniRef50_A7HBX1 Cluster: DNA uptake protein; n=2; Anaeromyxobact... 45 0.002
UniRef50_A6ESZ6 Cluster: ComEA protein-related protein; n=1; uni... 45 0.002
UniRef50_A4SJ96 Cluster: ComEA protein; n=3; Aeromonas|Rep: ComE... 45 0.002
UniRef50_A3TJH6 Cluster: Putative DNA-binding protein; n=1; Jani... 45 0.002
UniRef50_Q5P3B5 Cluster: ComE operon protein 1-related protein; ... 44 0.003
UniRef50_A6BGR9 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A4CD31 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A0Z742 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A7T0R6 Cluster: Predicted protein; n=1; Nematostella ve... 44 0.003
UniRef50_Q18Q70 Cluster: Competence protein ComEA helix-hairpin-... 44 0.004
UniRef50_A5KJM8 Cluster: Putative uncharacterized protein; n=2; ... 44 0.004
UniRef50_Q8EPV5 Cluster: Late competence protein; n=1; Oceanobac... 44 0.006
UniRef50_Q1PXY4 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_Q1NXG4 Cluster: Phospholipase D/Transphosphatidylase pr... 44 0.006
UniRef50_Q03QM7 Cluster: DNA uptake protein related DNA-binding ... 44 0.006
UniRef50_A6PJD0 Cluster: Competence protein ComEA helix-hairpin-... 44 0.006
UniRef50_A3XGR6 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_A0X4V8 Cluster: Competence protein ComEA helix-hairpin-... 44 0.006
UniRef50_Q9RXU9 Cluster: Putative uncharacterized protein; n=1; ... 43 0.010
UniRef50_Q65RQ5 Cluster: ComEA protein; n=2; Pasteurellaceae|Rep... 43 0.010
UniRef50_A6FES4 Cluster: ComEA; n=1; Moritella sp. PE36|Rep: Com... 43 0.010
UniRef50_A3Y3S0 Cluster: DNA uptake protein; n=10; Vibrionales|R... 43 0.010
UniRef50_A0J9L7 Cluster: Competence protein ComEA helix-hairpin-... 43 0.010
UniRef50_A5FP79 Cluster: DNA uptake protein and related DNA-bind... 42 0.013
UniRef50_Q9N4L5 Cluster: Putative uncharacterized protein; n=2; ... 42 0.013
UniRef50_Q2JI81 Cluster: Phospholipase D/competence protein ComE... 42 0.017
UniRef50_A6FX28 Cluster: Putative uncharacterized protein; n=1; ... 42 0.017
UniRef50_A3QFV7 Cluster: Competence protein ComEA helix-hairpin-... 42 0.017
UniRef50_Q6AL09 Cluster: Putative uncharacterized protein; n=1; ... 42 0.023
UniRef50_Q2SJI1 Cluster: DNA uptake protein and related DNA-bind... 42 0.023
UniRef50_UPI0000E0E604 Cluster: hypothetical protein OM2255_1963... 41 0.030
UniRef50_Q6LIL0 Cluster: Putative uncharacterized protein; n=3; ... 41 0.030
UniRef50_Q7VNA6 Cluster: Putative uncharacterized protein; n=1; ... 41 0.040
UniRef50_Q6ALW5 Cluster: Similar to DNA transport competence pro... 41 0.040
UniRef50_Q2SPG5 Cluster: Protein containing HHH motif; n=1; Hahe... 41 0.040
UniRef50_Q44NK3 Cluster: Helix-hairpin-helix motif; n=5; Chlorob... 41 0.040
UniRef50_Q1N619 Cluster: DNA uptake protein and related DNA-bind... 41 0.040
UniRef50_Q0A9Z1 Cluster: Competence protein ComEA helix-hairpin-... 41 0.040
UniRef50_A4AGG3 Cluster: Competence protein ComEA helix-hairpin-... 41 0.040
UniRef50_A3YGE0 Cluster: Putative uncharacterized protein; n=1; ... 41 0.040
UniRef50_A1WUI2 Cluster: Transcriptional regulator, Fis family p... 41 0.040
UniRef50_A1R6X3 Cluster: Putative comEA protein; n=1; Arthrobact... 41 0.040
UniRef50_A6GK03 Cluster: Competence protein ComEA-related protei... 40 0.053
UniRef50_A3U4E0 Cluster: Putative uncharacterized protein; n=1; ... 40 0.053
UniRef50_A3M289 Cluster: Putative DNA uptake protein; n=1; Acine... 40 0.053
UniRef50_A2TTL6 Cluster: Putative uncharacterized protein; n=1; ... 40 0.053
UniRef50_Q00XW9 Cluster: Transcriptional accessory protein; n=2;... 40 0.053
UniRef50_UPI000050F794 Cluster: COG1555: DNA uptake protein and ... 40 0.070
UniRef50_Q12LC2 Cluster: Competence protein ComEA helix-hairpin-... 40 0.070
UniRef50_A1ARE9 Cluster: Putative uncharacterized protein; n=1; ... 40 0.070
UniRef50_A0W5M0 Cluster: ComEA-related protein precursor; n=1; G... 40 0.070
UniRef50_A7HGA6 Cluster: Helix-hairpin-helix motif precursor; n=... 40 0.093
UniRef50_A7FQJ6 Cluster: RNA-binding protein; n=4; Clostridium b... 40 0.093
UniRef50_A4W7B3 Cluster: Competence protein ComEA helix-hairpin-... 40 0.093
UniRef50_A4M6C4 Cluster: Competence protein ComEA helix-hairpin-... 40 0.093
UniRef50_Q17DF5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.093
UniRef50_Q57134 Cluster: Uncharacterized protein HI1008 precurso... 40 0.093
UniRef50_Q8KB66 Cluster: ComEA-related protein; n=1; Chlorobacul... 39 0.12
UniRef50_A5FIK8 Cluster: Putative uncharacterized protein; n=3; ... 39 0.12
UniRef50_A1SHW1 Cluster: Competence protein ComEA helix-hairpin-... 39 0.12
UniRef50_Q2NGF6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.12
UniRef50_Q080A1 Cluster: Competence protein ComEA helix-hairpin-... 39 0.16
UniRef50_P0AAR9 Cluster: Uncharacterized protein ybaV precursor;... 39 0.16
UniRef50_Q892P4 Cluster: Come operon protein 1; n=6; Clostridium... 38 0.21
UniRef50_Q7MU66 Cluster: Conserved domain protein; n=1; Porphyro... 38 0.21
UniRef50_Q0YI81 Cluster: Helix-hairpin-helix motif; n=1; Geobact... 38 0.21
UniRef50_A6Q6F8 Cluster: DNA uptake protein; n=1; Sulfurovum sp.... 38 0.21
UniRef50_A4VJE7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.21
UniRef50_Q026M9 Cluster: DNA uptake protein and related DNA-bind... 38 0.28
UniRef50_Q01NQ1 Cluster: Competence protein ComEA helix-hairpin-... 38 0.28
UniRef50_A5I0J3 Cluster: Putative membrane protein; n=4; Clostri... 38 0.28
UniRef50_A4M6H3 Cluster: RNA binding S1 domain protein; n=1; Pet... 38 0.28
UniRef50_A0IWY1 Cluster: Competence protein ComEA helix-hairpin-... 38 0.28
UniRef50_Q9CKF6 Cluster: Putative uncharacterized protein PM1665... 38 0.37
UniRef50_Q4ZQA5 Cluster: Competence protein ComEA helix-hairpin-... 38 0.37
UniRef50_Q2S2C5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.50
UniRef50_Q21IS7 Cluster: Competence protein ComEA helix-hairpin-... 37 0.50
UniRef50_A1FWY0 Cluster: Competence protein ComEA helix-hairpin-... 37 0.50
UniRef50_Q8FGH2 Cluster: Putative uncharacterized protein; n=2; ... 37 0.65
UniRef50_Q67K87 Cluster: Ribosomal protein S1-like RNA-binding d... 37 0.65
UniRef50_Q47FY2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.65
UniRef50_A6LZZ5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.65
UniRef50_Q8YSV5 Cluster: All2976 protein; n=3; Nostocaceae|Rep: ... 36 0.86
UniRef50_Q6LNW5 Cluster: Putative DNA uptake protein; n=4; Vibri... 36 1.1
UniRef50_A5IZ64 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q9RTB0 Cluster: Competence protein ComEA-related protei... 36 1.5
UniRef50_Q8EN07 Cluster: Late competence protein; n=1; Oceanobac... 36 1.5
UniRef50_Q30TR1 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_A6G1S3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_A4BGP1 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_Q8RH48 Cluster: Transcription accessory protein; n=9; B... 35 2.0
UniRef50_A6G3N0 Cluster: Competence protein comEA; n=1; Plesiocy... 35 2.0
UniRef50_A4AT81 Cluster: Putative uncharacterized protein; n=1; ... 35 2.6
UniRef50_A7SH52 Cluster: Predicted protein; n=1; Nematostella ve... 35 2.6
UniRef50_Q1INK1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.5
UniRef50_Q12AI9 Cluster: RNA binding S1; n=3; Comamonadaceae|Rep... 34 3.5
UniRef50_A6VTC2 Cluster: RNA binding S1 domain protein; n=2; Mar... 34 3.5
UniRef50_A6LJP5 Cluster: RNA binding S1 domain protein; n=1; The... 34 3.5
UniRef50_A4SW63 Cluster: Helix-hairpin-helix motif precursor; n=... 34 3.5
UniRef50_Q31PX0 Cluster: Putative uncharacterized protein; n=2; ... 34 4.6
UniRef50_Q13DT2 Cluster: Putative uncharacterized protein; n=4; ... 34 4.6
UniRef50_P96626 Cluster: YdcI protein; n=1; Bacillus subtilis|Re... 34 4.6
UniRef50_A6Q872 Cluster: Transcription accessory protein; n=1; S... 34 4.6
UniRef50_A6LGB3 Cluster: Putative uncharacterized protein; n=2; ... 34 4.6
UniRef50_Q3A5U8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.1
UniRef50_Q022M3 Cluster: Putative uncharacterized protein precur... 33 6.1
UniRef50_A6C5P8 Cluster: Ribosomal protein S1-like RNA-binding d... 33 6.1
UniRef50_A5NV11 Cluster: RNA binding S1 domain protein; n=3; Bac... 33 6.1
UniRef50_A4SD07 Cluster: Helix-hairpin-helix DNA-binding, class ... 33 6.1
UniRef50_A4M089 Cluster: Peptidylprolyl isomerase precursor; n=1... 33 6.1
UniRef50_Q88LW4 Cluster: ComEA-related protein; n=4; Pseudomonas... 33 8.1
UniRef50_Q74C77 Cluster: ComEA-related protein; n=1; Geobacter s... 33 8.1
UniRef50_A1FL53 Cluster: Competence protein ComEA helix-hairpin-... 33 8.1
>UniRef50_UPI0000D56273 Cluster: PREDICTED: hypothetical protein;
n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
protein - Tribolium castaneum
Length = 547
Score = 167 bits (405), Expect = 4e-40
Identities = 85/144 (59%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Frame = +2
Query: 368 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 547
N ++LSHTF+L + + EL+NIN A+EE+LMTLPGV+R+ AR IV HR+ IGRF++V+D
Sbjct: 32 NHANLSHTFTLNDNHDKVELLNINQASEEELMTLPGVSRETARSIVEHRKAIGRFRKVED 91
Query: 548 LALVSGIGADKLELLRPEICTHTRKQLSRASSCAHSLDSIR------LPSESRLCSINSS 709
LALV GIGADKLELLRPEIC +R+ LS ASS A S DS+R +RL ++N +
Sbjct: 92 LALVRGIGADKLELLRPEICVSSRRNLSCASSRAQSYDSLRSADSRLTVKSNRLVNVNKA 151
Query: 710 SVFQLQCVPGLNQEIAANIVXYRN 781
SVF+LQCV G+ QEIAA IV YR+
Sbjct: 152 SVFELQCVHGITQEIAAAIVHYRD 175
Score = 39.9 bits (89), Expect = 0.070
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
L+N+N A+ +L + G+ +++A IV +R G FK+V+DL + I +L+
Sbjct: 145 LVNVNKASVFELQCVHGITQEIAAAIVHYRDKKGPFKQVEDLLKIKSIDRIRLD 198
>UniRef50_Q4RIW6 Cluster: Chromosome undetermined SCAF15041, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF15041,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 433
Score = 113 bits (272), Expect = 5e-24
Identities = 60/122 (49%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
E +NINAATEE+LMTLPGV R +A+ IV +R IG F++V+DLALVSG+GA KLE ++PE
Sbjct: 40 ERLNINAATEEELMTLPGVGRAVAQNIVEYRDRIGGFRKVEDLALVSGVGATKLEAVKPE 99
Query: 602 ICTHTRKQLSRASSCAHSLDSIRLPSESRLC---SINSSSVFQLQCVPGLNQEIAANIVX 772
IC SR SS HS S+R + C +IN+++ QL + G+ +++AA+IV
Sbjct: 100 ICVS-----SRTSSSQHSPASLRRDPDLHPCTGVNINTATPAQLMSIRGITEKVAASIVA 154
Query: 773 YR 778
+R
Sbjct: 155 FR 156
>UniRef50_Q9C0F7 Cluster: KIAA1706 protein; n=29; Euteleostomi|Rep:
KIAA1706 protein - Homo sapiens (Human)
Length = 573
Score = 98.3 bits (234), Expect = 2e-19
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 11/130 (8%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
E +NIN ATEE+LMTLPGV R +AR IV +R+ IG FK+V+DLALVSG+GA KLE ++ E
Sbjct: 42 ERLNINTATEEELMTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKLEQVKFE 101
Query: 602 ICT--------HTRKQLSR---ASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQ 748
IC H+ L R A H L + +P R+ +IN+++ QL V GL++
Sbjct: 102 ICVSSKGSSAQHSPSSLRRDLLAEQQPHHL-ATAVPLTPRV-NINTATPAQLMSVRGLSE 159
Query: 749 EIAANIVXYR 778
++A +IV +R
Sbjct: 160 KMALSIVDFR 169
Score = 47.2 bits (107), Expect = 5e-04
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI- 604
+NIN AT QLM++ G++ ++A IV R+ G F+ V+DL + GI A L+ +R ++
Sbjct: 141 VNINTATPAQLMSVRGLSEKMALSIVDFRREHGPFRSVEDLVRMDGINAAFLDRIRHQVF 200
Query: 605 -------CTHTRKQLSRASSCAHSLDSIRLPSE 682
THT L+ + S S+ L SE
Sbjct: 201 AERSRPPSTHTNGGLTFTAKPHPSPTSLSLQSE 233
>UniRef50_UPI0000584CEA Cluster: PREDICTED: similar to KIAA1706
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to KIAA1706 protein -
Strongylocentrotus purpuratus
Length = 567
Score = 94.7 bits (225), Expect = 2e-18
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Frame = +2
Query: 362 KLNKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRV 541
K + +S T+S + +NIN ATEE+LMTLP + R +AR I+++R IG F++
Sbjct: 29 KRPRRDISATYSANDFVMTLDQLNINQATEEELMTLPTITRNIARNIIQYRNHIGGFRKA 88
Query: 542 DDLALVSGIGADKLELLRPEI-C------THTRKQLSRASSCAHSLDSIRLPSESRLCSI 700
+DLALVSG+GA+KL L+R EI C +++ SR SS H L+++ S +
Sbjct: 89 EDLALVSGVGANKLALIRMEIYCGKYDPGSYSTPSSSRKSS--HRLNALLKQSSEIKVDV 146
Query: 701 NSSSVFQLQCVPGLNQEIAANIVXYRN 781
N ++ L V G+ ++A IV YRN
Sbjct: 147 NKATATDLCKVSGIGTDLAQRIVEYRN 173
>UniRef50_A6LNS9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Thermosipho
melanesiensis BI429|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Thermosipho
melanesiensis BI429
Length = 184
Score = 70.5 bits (165), Expect = 4e-11
Identities = 40/119 (33%), Positives = 69/119 (57%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
++++IN+AT EQL++LPG+ A+ I+ +R+ +G F +DDL VSGIG L+ ++P
Sbjct: 44 QIIDINSATFEQLVSLPGIGPTKAKSIINYREKVGEFLSIDDLLNVSGIGPSTLKKIKPF 103
Query: 602 ICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVXYR 778
I T ++ + S SE +IN++SV +L +PG+ + A I+ +R
Sbjct: 104 IKIKTANVITNSPS----------GSEDVKININNASVEELMKLPGIGKVKAQEIIEFR 152
Score = 54.0 bits (124), Expect = 4e-06
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +2
Query: 371 KSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDL 550
K ++ + PS +NIN A+ E+LM LPG+ + A+EI+ R+ G + +DL
Sbjct: 105 KIKTANVITNSPSGSEDVKININNASVEELMKLPGIGKVKAQEIIEFRKKFGNVQSFEDL 164
Query: 551 ALVSGIGADKLELLRPEI 604
V GIG LE ++P I
Sbjct: 165 LKVKGIGKKTLEKIKPFI 182
>UniRef50_Q67SA3 Cluster: Putative DNA-binding protein; n=1;
Symbiobacterium thermophilum|Rep: Putative DNA-binding
protein - Symbiobacterium thermophilum
Length = 230
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L+NIN A + +L T+PG+ LAR I+ +R G F+ VDDL VSGIG+ LE +RP +
Sbjct: 169 LVNINTAGQAELETVPGIGPALARAIITYRTEHGPFQSVDDLINVSGIGSKTLEKIRPYV 228
>UniRef50_Q1D6Q9 Cluster: ComE protein; n=2; Cystobacterineae|Rep:
ComE protein - Myxococcus xanthus (strain DK 1622)
Length = 138
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+++N+ATEE+L LPGV R LAR +V R+ G FK DD+ V G+G+ KL+ LR
Sbjct: 68 LDLNSATEEELALLPGVGRALARSLVEAREEQGGFKSWDDVDAVRGVGSAKLQTLR 123
>UniRef50_Q8XIJ9 Cluster: ComE operon protein; n=3; Clostridium
perfringens|Rep: ComE operon protein - Clostridium
perfringens
Length = 260
Score = 58.0 bits (134), Expect = 2e-07
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++NIN A++E LMTL G+ A+ I+ +R IG FK VDD+ VSGIG LE ++ +I
Sbjct: 198 VININTASKETLMTLNGIGESKAQAIIDYRDEIGGFKSVDDITNVSGIGEKTLEKIKDKI 257
>UniRef50_Q5KWY4 Cluster: Late competence protein; n=2;
Geobacillus|Rep: Late competence protein - Geobacillus
kaustophilus
Length = 207
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +2
Query: 434 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+N ATEE+LM LPG+ A+ I+ +R+ G F+RV+DL V+GIG LE L+P
Sbjct: 148 VNTATEEELMQLPGIGPAKAKAIIAYREEHGPFQRVEDLLNVTGIGEKTLEKLKP 202
>UniRef50_A7HNQ6 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1;
Fervidobacterium nodosum Rt17-B1|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein -
Fervidobacterium nodosum Rt17-B1
Length = 227
Score = 58.0 bits (134), Expect = 2e-07
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++++N A+ EQL TLPG+ AR IV +R+ F + +DL VSGIG E ++ I
Sbjct: 69 IIDLNTASVEQLQTLPGIGPSKARAIVEYREK-QPFSKPEDLMNVSGIGPKTFEKIKDRI 127
Query: 605 CTHTRKQLSRASSCAHSLDSIRLPSESR---------LCSINSSSVFQLQCVPGLNQEIA 757
T ++ A++ + S ++S+ +IN++++ +LQ +PG+ A
Sbjct: 128 TVSTVNTVNMANNTPSTTQSTTQNNQSQNGNKNISPEKININTANLEELQKLPGIGPSKA 187
Query: 758 ANIVXYR 778
I+ YR
Sbjct: 188 QAIIDYR 194
Score = 53.2 bits (122), Expect = 7e-06
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = +2
Query: 419 PELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
PE +NIN A E+L LPG+ A+ I+ +R+ +G+FK ++++ V GIG E L+
Sbjct: 163 PEKININTANLEELQKLPGIGPSKAQAIIDYREKVGKFKSIEEIKNVKGIGEKTYEKLK 221
>UniRef50_Q3XYU3 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Enterococcus faecium
DO|Rep: Competence protein ComEA helix-hairpin-helix
region - Enterococcus faecium DO
Length = 242
Score = 57.6 bits (133), Expect = 3e-07
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +2
Query: 401 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
P ++ P +NIN AT +L +PG+ A+EI+R R+ G F++V+DL +SGIG
Sbjct: 172 PTADSEPPKININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKT 231
Query: 581 LELLR 595
+E L+
Sbjct: 232 VEKLK 236
>UniRef50_Q6F851 Cluster: Putative DNA uptake protein and/or related
DNA-binding protein; n=1; Acinetobacter sp. ADP1|Rep:
Putative DNA uptake protein and/or related DNA-binding
protein - Acinetobacter sp. (strain ADP1)
Length = 128
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 362 KLNKSSLSHTFSLPPSEEYPEL-MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKR 538
+LN S+ H+ S P + + +NIN+AT ++L L GV + A IV +RQ G+F
Sbjct: 45 RLNSSASHHSLSKPTQQSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFAS 104
Query: 539 VDDLALVSGIGADKLELLRPEI 604
VDDL V GIG +E R +
Sbjct: 105 VDDLQKVKGIGPKFIEKNRDRL 126
>UniRef50_A5D3Z2 Cluster: Hypothetical membrane protein; n=1;
Pelotomaculum thermopropionicum SI|Rep: Hypothetical
membrane protein - Pelotomaculum thermopropionicum SI
Length = 208
Score = 56.8 bits (131), Expect = 6e-07
Identities = 27/64 (42%), Positives = 42/64 (65%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
+L+NIN A + QL TLPG+ LA+ I+++R+ G FK +++L VSGIG E L+ +
Sbjct: 145 QLVNINTADQGQLDTLPGIGPALAQRIIQYRESNGPFKTIEELKNVSGIGDKNFENLKDK 204
Query: 602 ICTH 613
I +
Sbjct: 205 ITVY 208
>UniRef50_A3IF87 Cluster: Competence protein comEA; n=1; Bacillus
sp. B14905|Rep: Competence protein comEA - Bacillus sp.
B14905
Length = 211
Score = 56.8 bits (131), Expect = 6e-07
Identities = 32/80 (40%), Positives = 44/80 (55%)
Frame = +2
Query: 365 LNKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVD 544
L +S + S SE + +NIN A E L TLPG+ A+ I+ +R+ GRF+ +D
Sbjct: 129 LEDASTNLLISPIESENKDQKININIADTETLATLPGIGPSKAQSILSYREENGRFQTID 188
Query: 545 DLALVSGIGADKLELLRPEI 604
DL VSGIG E L+ I
Sbjct: 189 DLRNVSGIGEKTFEKLKDSI 208
>UniRef50_Q1PW28 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 112
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN ATE QL LPG+ +LA+EIV HR IG FK D+ V G+ K E
Sbjct: 39 VNINTATEAQLAMLPGIGEKLAKEIVAHRTKIGPFKTTGDIIKVKGLKDKKFE 91
>UniRef50_Q831Q1 Cluster: Competence protein comEA; n=1;
Enterococcus faecalis|Rep: Competence protein comEA -
Enterococcus faecalis (Streptococcus faecalis)
Length = 214
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +2
Query: 395 SLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGA 574
S P + E +N+N ATE +L T+ G+ + A+EI+R R G FK V++L V GIG
Sbjct: 141 SAPAQQNQEEKINLNTATEAELQTISGIGAKKAQEIIRFRDEQGPFKTVEELKNVPGIGE 200
Query: 575 DKLELLR 595
+E L+
Sbjct: 201 KTVERLK 207
>UniRef50_Q0EYL1 Cluster: Late competence protein required for DNA
binding and uptake; n=1; Mariprofundus ferrooxydans
PV-1|Rep: Late competence protein required for DNA
binding and uptake - Mariprofundus ferrooxydans PV-1
Length = 96
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+++N AT EQL T+ G+ ++ A EIV +R+ G FK VD L V GIG KLE +R +
Sbjct: 28 VDVNTATVEQLQTVNGIGKKTAAEIVAYREAHGPFKSVDALVHVKGIGEKKLEQIRGSV 86
>UniRef50_Q70T35 Cluster: ComEA protein; n=2; Bacillus|Rep: ComEA
protein - Bacillus megaterium
Length = 214
Score = 55.2 bits (127), Expect = 2e-06
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +2
Query: 374 SSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA 553
S +S SL S + P L+NIN A ++L TL G+ A IV +R+ G F+ V+DL
Sbjct: 136 SPVSLISSLGTSNDQP-LVNINTANTDELQTLNGIGPSKASAIVSYREENGLFQTVEDLG 194
Query: 554 LVSGIGADKLELLRPEI 604
VSGIG LE ++ +I
Sbjct: 195 QVSGIGEKSLEKIKAQI 211
>UniRef50_Q182I3 Cluster: Putative competence protein precursor;
n=1; Clostridium difficile 630|Rep: Putative competence
protein precursor - Clostridium difficile (strain 630)
Length = 234
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/60 (41%), Positives = 40/60 (66%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+NIN AT E+L +LPGV A +I++HR+ G+F ++++ V+GIG K E ++ IC
Sbjct: 173 VNINVATIEELDSLPGVGEATANKILQHREENGQFSSIEEIKNVNGIGDKKYENIKDLIC 232
>UniRef50_Q8FN96 Cluster: Putative uncharacterized protein; n=1;
Corynebacterium efficiens|Rep: Putative uncharacterized
protein - Corynebacterium efficiens
Length = 255
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
L+++N AT +L TLPGV + A+ I++HR+ G F VDDL V GIG K
Sbjct: 194 LISLNTATAAELQTLPGVGEKTAQAIIQHREANGGFSAVDDLLEVKGIGPSK 245
>UniRef50_Q2ACP1 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Halothermothrix orenii
H 168|Rep: Competence protein ComEA helix-hairpin-helix
region - Halothermothrix orenii H 168
Length = 245
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+++YPE +N+N +++EQL LPG+ AR IV++R+ G F L VSGIG E
Sbjct: 177 TDKYPEKINLNRSSQEQLQKLPGIGPSKARSIVKYREENGFFTDKAQLLNVSGIGEKTYE 236
Query: 587 LLRPEI 604
L+ ++
Sbjct: 237 KLKDKV 242
>UniRef50_Q03JE8 Cluster: DNA uptake protein or related DNA-binding
protein; n=3; Streptococcus thermophilus|Rep: DNA uptake
protein or related DNA-binding protein - Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9)
Length = 231
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N AT EQL T+ G+ + A +++ +R+ G F+ VDDL VSGIG L+ +R +
Sbjct: 170 INLNTATSEQLQTISGIGAKRAEDVIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESL 228
>UniRef50_A3DET3 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Clostridium thermocellum ATCC 27405|Rep: Competence
protein ComEA helix-hairpin-helix repeat protein
precursor - Clostridium thermocellum (strain ATCC 27405
/ DSM 1237)
Length = 296
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+NIN AT E+L +LPG+ +A +IV +R+ G+FK ++D+ VSGIG K ++
Sbjct: 235 ININTATVEELDSLPGIGPAIAAKIVAYREQNGKFKSIEDIMNVSGIGQSKFNNIK 290
>UniRef50_A4EC57 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 244
Score = 53.6 bits (123), Expect = 5e-06
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L+NIN A+ +L TL G+ +A+ I+ R G F VDDL VSGIG KL ++ I
Sbjct: 183 LVNINTASAAELQTLSGIGPSMAQSIIDERTKNGAFASVDDLMRVSGIGEKKLAKIKDCI 242
Query: 605 C 607
C
Sbjct: 243 C 243
>UniRef50_Q15QY4 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Pseudoalteromonas atlantica T6c|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 102
Score = 53.2 bits (122), Expect = 7e-06
Identities = 22/55 (40%), Positives = 37/55 (67%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+++ + +N+N AT EQL+TLPG+ ++ A I+ +R G+F ++ DL V GIG
Sbjct: 34 TQKKSQKINLNTATAEQLVTLPGIGKKKAAAIIAYRDKSGKFAKISDLTNVKGIG 88
>UniRef50_A4J7G9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1;
Desulfotomaculum reducens MI-1|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein -
Desulfotomaculum reducens MI-1
Length = 213
Score = 53.2 bits (122), Expect = 7e-06
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L+NIN A ++L +LPG+ LA I++HR+ G F+ +DL VSGIG K E L+ I
Sbjct: 151 LVNINTAGPQELDSLPGIGPALAERIIQHREANGPFQCTEDLKNVSGIGDKKFEDLQHRI 210
>UniRef50_Q483A1 Cluster: ComE domain protein; n=1; Colwellia
psychrerythraea 34H|Rep: ComE domain protein - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 112
Score = 52.8 bits (121), Expect = 9e-06
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+++N+N +T EQL+TL GV A+ I+ +RQ +G FK V++L VSGIG
Sbjct: 50 QVVNLNKSTFEQLVTLKGVGNTKAQAIIVYRQQVGAFKSVNELTKVSGIG 99
>UniRef50_Q03F17 Cluster: DNA uptake protein related DNA-binding
protein; n=1; Pediococcus pentosaceus ATCC 25745|Rep:
DNA uptake protein related DNA-binding protein -
Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Length = 235
Score = 52.8 bits (121), Expect = 9e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +2
Query: 365 LNKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVD 544
+ SS+S + +++NIN A++ +L+TL GV + A +I+ +R+ G FK ++
Sbjct: 154 VGSSSISSSSPSTTDSSTEKIVNINTASKAELLTLNGVGDKKAEQIINYREQQGEFKSIE 213
Query: 545 DLALVSGIGADKL 583
DL V GIG DK+
Sbjct: 214 DLKQVQGIG-DKI 225
>UniRef50_A0KYK0 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=4; Shewanella|Rep:
Competence protein ComEA helix-hairpin-helix repeat
protein - Shewanella sp. (strain ANA-3)
Length = 121
Score = 52.8 bits (121), Expect = 9e-06
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN A+ EQL L G+ A+ I+ +R G+FK +D+LA VSGIGA +E
Sbjct: 61 VNINTASSEQLQLLKGIGAAKAQAIIDYRTQNGKFKAIDELANVSGIGAKLIE 113
>UniRef50_Q8G4D7 Cluster: Putative uncharacterized protein; n=2;
Bifidobacterium longum|Rep: Putative uncharacterized
protein - Bifidobacterium longum
Length = 259
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L+N+N AT E+L ++ G+ A+ I+ HR IG + VD L V GIG+ LE +R ++
Sbjct: 197 LINLNTATAEELQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLLDVKGIGSKTLETMRGQV 256
>UniRef50_Q49Y31 Cluster: Putative DNA uptake protein and related
DNA-binding protein; n=1; Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305|Rep: Putative DNA uptake
protein and related DNA-binding protein - Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305
/DSM 20229)
Length = 240
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
E +NIN ATE QL+T+ G+ A+ I+ +RQ G F+ V+ L V+GIGA LE
Sbjct: 178 EQININDATESQLLTINGIGPTKAKAIIEYRQQHGPFESVEQLKDVNGIGAKTLE 232
>UniRef50_Q2BK91 Cluster: Putative uncharacterized protein; n=1;
Neptuniibacter caesariensis|Rep: Putative
uncharacterized protein - Neptuniibacter caesariensis
Length = 100
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 398 LPPSEEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
L P + EL++IN A+ EQL T L G+ A IV HR+ G FK VD+L V GIG
Sbjct: 16 LVPVSAFAELLDINTASVEQLSTNLKGIGHSKAEAIVAHREQHGPFKTVDELTQVKGIG 74
>UniRef50_Q1ETT2 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Clostridium oremlandii
OhILAs|Rep: Competence protein ComEA helix-hairpin-helix
region - Clostridium oremlandii OhILAs
Length = 207
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +2
Query: 389 TFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 568
T +L + L+NIN A+ +L LPG+ LA I+ HR G F ++DL VSGI
Sbjct: 133 TTNLVGGDTKSNLININTASAAELTALPGIGEVLANRIIEHRTSKGSFGSIEDLKNVSGI 192
Query: 569 GADKLELLRPEI 604
G K ++ +I
Sbjct: 193 GDRKFSDIKDKI 204
>UniRef50_A4XAF1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=2;
Salinispora|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Salinispora tropica
CNB-440
Length = 280
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+N+N A+ QL TLPGV LA+ I+ HRQ G F+ V DL V GIG + E L+
Sbjct: 220 VNLNTASLAQLDTLPGVGPVLAQRILDHRQQHGGFRSVSDLRQVGGIGDTRYEQLK 275
>UniRef50_Q47IV8 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=3; Betaproteobacteria|Rep:
Competence protein ComEA helix-hairpin-helix region -
Dechloromonas aromatica (strain RCB)
Length = 265
Score = 52.0 bits (119), Expect = 2e-05
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN AT EQL L G+ A+ IV +R+ G FK VD+L V GIG L+ LRP++
Sbjct: 45 ININTATPEQLDGLKGIGPTKAKAIVDYRKKNGPFKSVDELQNVPGIGPATLKDLRPDV 103
>UniRef50_Q3AF21 Cluster: Competence protein; n=1; Carboxydothermus
hydrogenoformans Z-2901|Rep: Competence protein -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 204
Score = 52.0 bits (119), Expect = 2e-05
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN AT E+L LPGV A +I+ +R+ G F ++DL V GIG K E L+ I
Sbjct: 143 VNINTATAEELDELPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDKKFETLKDYI 201
>UniRef50_Q38WQ9 Cluster: Putative bacterial type II
secretion/competence system, protein ComEA- like; n=1;
Lactobacillus sakei subsp. sakei 23K|Rep: Putative
bacterial type II secretion/competence system, protein
ComEA- like - Lactobacillus sakei subsp. sakei (strain
23K)
Length = 234
Score = 52.0 bits (119), Expect = 2e-05
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+++N A QL TL G+ + A +I+ +R G+FK+++DL V GIG E L+ +IC
Sbjct: 173 IDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQIC 232
Query: 608 TH 613
+
Sbjct: 233 VN 234
>UniRef50_Q1ZI08 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 104
Score = 52.0 bits (119), Expect = 2e-05
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
E +NIN A+ + G+ + A EIV++R+ G+FK+++DL V+GIG LE +RP
Sbjct: 42 EKLNINTASIADFAMIKGLGEKKAGEIVKYRETYGKFKKIEDLLNVTGIGKMLLEKIRP 100
>UniRef50_A0Q1S7 Cluster: Competence protein; n=1; Clostridium novyi
NT|Rep: Competence protein - Clostridium novyi (strain
NT)
Length = 224
Score = 52.0 bits (119), Expect = 2e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN AT+E+LM LPGV A+ I+ +R+ G F VDD+ V+ IG L + +I
Sbjct: 163 ININTATKEELMKLPGVGEVTAQNIIDYREKSGGFNSVDDITKVNRIGTKTLAKFKDKI 221
>UniRef50_Q5HNV7 Cluster: ComE operon protein 1, putative; n=2;
Staphylococcus epidermidis|Rep: ComE operon protein 1,
putative - Staphylococcus epidermidis (strain ATCC 35984
/ RP62A)
Length = 224
Score = 51.6 bits (118), Expect = 2e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+N+N+ATEEQL +PG+ A+EI+ +R+ F +DDL + G G E L+
Sbjct: 164 LNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 219
>UniRef50_Q3E1Z2 Cluster: Helix-hairpin-helix motif; n=1;
Chloroflexus aurantiacus J-10-fl|Rep:
Helix-hairpin-helix motif - Chloroflexus aurantiacus
J-10-fl
Length = 245
Score = 51.6 bits (118), Expect = 2e-05
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
++IN A E L+ LPG+ LA I+ +R+ G FK VDDL +SGIG + + R
Sbjct: 181 VDINRADRETLIALPGIGPVLADRIIAYREAHGPFKSVDDLTAISGIGERNINIFR 236
>UniRef50_Q5WHH4 Cluster: Late competence protein ComEA; n=1;
Bacillus clausii KSM-K16|Rep: Late competence protein
ComEA - Bacillus clausii (strain KSM-K16)
Length = 204
Score = 51.2 bits (117), Expect = 3e-05
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +2
Query: 413 EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 592
++ + +NIN ATE L+TL G+ A I+ +R+ G F V++L VSGIG E L
Sbjct: 138 DHEDTININEATEADLLTLQGIGPSKAAAIIGYREENGSFATVEELMNVSGIGEKTFEAL 197
Query: 593 RPEI 604
P I
Sbjct: 198 EPLI 201
>UniRef50_Q9RIA7 Cluster: ComEA protein; n=24; Proteobacteria|Rep:
ComEA protein - Neisseria meningitidis
Length = 170
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
+NINAA++++L LPG+ A+ I +R G FK VDDL V GIG L L+ +
Sbjct: 92 VNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQ 149
>UniRef50_A0H2U6 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=2; Chloroflexus|Rep:
Competence protein ComEA helix-hairpin-helix region -
Chloroflexus aggregans DSM 9485
Length = 205
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
EL+N+N AT L LPGV + LA I+ R+ G ++ VD+L VSGIG + P
Sbjct: 141 ELINLNRATASDLEELPGVGKTLAERIIARRETQGPYRSVDELREVSGIGEKLFNQIAP 199
>UniRef50_Q9CER3 Cluster: Competence protein ComEA; n=3; Lactococcus
lactis|Rep: Competence protein ComEA - Lactococcus
lactis subsp. lactis (Streptococcus lactis)
Length = 215
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
E +NIN A +L L GV ++ A++I+ R G FK ++DL VSG G LE L+ E
Sbjct: 152 EKININQADLTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDE 211
Query: 602 IC 607
+C
Sbjct: 212 LC 213
>UniRef50_Q8RB96 Cluster: DNA uptake protein and related DNA-binding
proteins; n=3; Thermoanaerobacter|Rep: DNA uptake
protein and related DNA-binding proteins -
Thermoanaerobacter tengcongensis
Length = 196
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN AT+E+L TLPG+ A I+ R+ G FK+++D+ V IG E ++ +I
Sbjct: 135 VNINTATKEELQTLPGIGPVTAERIIEFRETKGPFKKIEDIMNVPRIGPKMFEQIKDKI 193
>UniRef50_Q6HT65 Cluster: ComE operon protein 1; n=22; Bacillus|Rep:
ComE operon protein 1 - Bacillus anthracis
Length = 199
Score = 50.8 bits (116), Expect = 4e-05
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
E + INAA++EQL + G+ + A I+++R+ G F++++DL + GIG LE ++ +
Sbjct: 136 EKVRINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKDQ 195
Query: 602 I 604
I
Sbjct: 196 I 196
>UniRef50_Q1QEJ7 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=2;
Psychrobacter|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Psychrobacter
cryohalolentis (strain K5)
Length = 143
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
++NIN ATE +L L G+ A+ I+ +R+M G F+ VD+L V GIGA ++
Sbjct: 80 IININRATEGELTLLHGIGSNKAQAIILYREMFGSFRTVDELTKVKGIGAKTVD 133
>UniRef50_Q1NUX5 Cluster: Helix-hairpin-helix motif; n=1; delta
proteobacterium MLMS-1|Rep: Helix-hairpin-helix motif -
delta proteobacterium MLMS-1
Length = 115
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +2
Query: 434 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
IN A ++ L LPG+ LA IV HRQ G F +D L V GIG L+ LRP
Sbjct: 57 INRADQQTLTVLPGIGPVLAARIVEHRQRHGPFASIDQLTAVPGIGPVTLKRLRP 111
>UniRef50_O85197 Cluster: Competence protein; n=17;
Streptococcus|Rep: Competence protein - Streptococcus
pneumoniae
Length = 216
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/56 (41%), Positives = 38/56 (67%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+N+N A+ E+L + G+ + A++I+ HR+ G+FK VD+L VSGIG +E L+
Sbjct: 155 VNLNKASLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLK 210
>UniRef50_A1S4Z4 Cluster: DNA uptake protein-related DNA-binding
protein precursor; n=1; Shewanella amazonensis SB2B|Rep:
DNA uptake protein-related DNA-binding protein precursor
- Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Length = 103
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN ATE +L L G+ + A+ IV +R GRF V+DL V+G+G L+
Sbjct: 43 ININTATESELQLLKGIGQAKAKAIVEYRNQYGRFASVEDLTKVAGVGQKVLD 95
>UniRef50_A1RL71 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=7;
Shewanella|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Shewanella sp. (strain W3-18-1)
Length = 127
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN A+ E+L L G+ A+ IV +R G+F +DDLA VSGIGA +E
Sbjct: 67 VNINTASVEELQELKGIGAAKAQAIVDYRTQNGKFNAIDDLANVSGIGAKLIE 119
>UniRef50_A0LSY6 Cluster: Helix-hairpin-helix motif; n=1;
Acidothermus cellulolyticus 11B|Rep: Helix-hairpin-helix
motif - Acidothermus cellulolyticus (strain ATCC 43068 /
11B)
Length = 250
Score = 50.8 bits (116), Expect = 4e-05
Identities = 28/60 (46%), Positives = 34/60 (56%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L+N+N AT+++L TLPGV LA IV R GRF V L V GIG K LR +
Sbjct: 189 LINLNTATQQELETLPGVGPVLAGNIVAWRNRHGRFSSVAQLQEVPGIGPAKYAQLRTRV 248
>UniRef50_P39694 Cluster: ComE operon protein 1; n=2; Bacillus|Rep:
ComE operon protein 1 - Bacillus subtilis
Length = 205
Score = 50.8 bits (116), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L+NIN AT E+L + GV A I+ +R+ GRF+ ++D+ VSGIG E ++ I
Sbjct: 143 LVNINTATLEELQGISGVGPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSI 202
>UniRef50_Q82C63 Cluster: Putative exogenous DNA-binding protein;
n=2; Streptomyces|Rep: Putative exogenous DNA-binding
protein - Streptomyces avermitilis
Length = 387
Score = 50.4 bits (115), Expect = 5e-05
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG----ADKLELLR 595
+++N AT +QL TLPGV LA+ I+ +R G F+ VD+L V+GIG AD L+R
Sbjct: 327 VSLNTATADQLDTLPGVGPVLAQHIIDYRTQHGGFRSVDELREVNGIGDRRFADLQNLVR 386
Query: 596 P 598
P
Sbjct: 387 P 387
>UniRef50_Q47RQ3 Cluster: Helix-hairpin-helix DNA-binding, class 1;
n=1; Thermobifida fusca YX|Rep: Helix-hairpin-helix
DNA-binding, class 1 - Thermobifida fusca (strain YX)
Length = 355
Score = 50.4 bits (115), Expect = 5e-05
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+++N AT +QL TLPG+ LA+ I+ HR IG F V+ L V+GIG + LR
Sbjct: 291 IDLNTATADQLQTLPGIGPVLAQRIIDHRASIGGFTSVEQLHDVTGIGDRRFAELR 346
>UniRef50_UPI00015C4860 Cluster: hypothetical protein CCC13826_1428;
n=1; Campylobacter concisus 13826|Rep: hypothetical
protein CCC13826_1428 - Campylobacter concisus 13826
Length = 173
Score = 50.0 bits (114), Expect = 7e-05
Identities = 25/68 (36%), Positives = 42/68 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+N+N AT+E+LM+L G+ A I+ +R+ +F +DDL V+GIG + L+ EI
Sbjct: 19 INLNTATKEELMSLDGIGSAKADAIIEYRKA-NKFNSIDDLKNVNGIGDKTFDNLKGEIS 77
Query: 608 THTRKQLS 631
T + ++S
Sbjct: 78 TTGKSEVS 85
>UniRef50_Q7UJD5 Cluster: Probable comEA-related protein; n=1;
Pirellula sp.|Rep: Probable comEA-related protein -
Rhodopirellula baltica
Length = 234
Score = 50.0 bits (114), Expect = 7e-05
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+ +N++ +L LPG+ LA +VRHR+ G F V+DL V G+G L LRP
Sbjct: 109 IGLNSSDARELSLLPGIGPNLADRVVRHRESHGPFASVEDLLAVHGVGPKLLHSLRP 165
>UniRef50_Q8VQ77 Cluster: Late competence protein ComEA; n=6;
Bacillus|Rep: Late competence protein ComEA - Bacillus
licheniformis
Length = 209
Score = 50.0 bits (114), Expect = 7e-05
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
+++NIN A+ E+L +PG+ A ++ +R+ G F V+D+ VSGIG E ++
Sbjct: 146 DIVNINTASSEELQAIPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSA 205
Query: 602 I 604
I
Sbjct: 206 I 206
>UniRef50_A6CQY2 Cluster: Late competence protein; n=1; Bacillus sp.
SG-1|Rep: Late competence protein - Bacillus sp. SG-1
Length = 202
Score = 50.0 bits (114), Expect = 7e-05
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +2
Query: 416 YPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+ EL+NIN A+E+ LPG+ A+ I+ +R+ G FK V++L V+GIG E L+
Sbjct: 137 HSELLNINQASEQDFDGLPGIGPAKAKAIIEYRKENGPFKAVEELKDVTGIGEATFERLK 196
Query: 596 PEI 604
I
Sbjct: 197 ENI 199
>UniRef50_A0GZS8 Cluster: Helix-hairpin-helix motif; n=1;
Chloroflexus aggregans DSM 9485|Rep: Helix-hairpin-helix
motif - Chloroflexus aggregans DSM 9485
Length = 298
Score = 50.0 bits (114), Expect = 7e-05
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
++IN A L+TLPG+ LA I+ +R+ G FK VDDL VSGIG + R
Sbjct: 235 VDINRADRATLITLPGIGPVLADRIIAYREAHGPFKSVDDLIAVSGIGERNINAFR 290
>UniRef50_Q5XBA3 Cluster: COME operon protein 1; n=11; Streptococcus
pyogenes|Rep: COME operon protein 1 - Streptococcus
pyogenes serotype M6
Length = 220
Score = 49.6 bits (113), Expect = 9e-05
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++IN A+ E+L +PG+ + A++I+ R +G FK ++DL SGIG LE L+ +I
Sbjct: 159 VHINKASLEELQHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQASGIGEKTLEKLKDDI 217
>UniRef50_Q6M3A1 Cluster: Secreted DNA uptake protein or related
DNA-binding protein; n=3; Corynebacterium
glutamicum|Rep: Secreted DNA uptake protein or related
DNA-binding protein - Corynebacterium glutamicum
(Brevibacterium flavum)
Length = 217
Score = 49.6 bits (113), Expect = 9e-05
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
L+++N AT L+TLPGV + A+ I+ R+ G F V+DL V GIG K E
Sbjct: 156 LISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIGPSKFE 209
>UniRef50_A5CR90 Cluster: Putative uncharacterized protein; n=1;
Clavibacter michiganensis subsp. michiganensis NCPPB
382|Rep: Putative uncharacterized protein - Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
Length = 223
Score = 49.6 bits (113), Expect = 9e-05
Identities = 28/57 (49%), Positives = 32/57 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+++N AT EQL TLP V LA I+ R GRF RV DL V GIG L L P
Sbjct: 163 VDLNTATAEQLETLPRVGPSLAARIIAWRAAHGRFARVADLGRVPGIGDRTLASLTP 219
>UniRef50_A4B044 Cluster: Late competence protein; n=1; Alteromonas
macleodii 'Deep ecotype'|Rep: Late competence protein -
Alteromonas macleodii 'Deep ecotype'
Length = 105
Score = 49.6 bits (113), Expect = 9e-05
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
+++N AT EQL+TLPGV + A+ I+++R+ +G F V L V GIG L
Sbjct: 44 IDLNTATVEQLVTLPGVGQSKAKAIIKYREEVGPFLEVAQLTQVRGIGEKML 95
>UniRef50_A1UIX9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=16;
Mycobacterium|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Mycobacterium sp.
(strain KMS)
Length = 267
Score = 49.6 bits (113), Expect = 9e-05
Identities = 29/58 (50%), Positives = 32/58 (55%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
E +N+N AT EQL TLPGV A IV R G F VD L V GIG +L LR
Sbjct: 205 EPVNLNTATVEQLDTLPGVGPVTAAAIVAWRDAHGAFSSVDQLGDVDGIGPARLAKLR 262
>UniRef50_A1TBZ2 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=2;
Corynebacterineae|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1)
Length = 269
Score = 49.6 bits (113), Expect = 9e-05
Identities = 27/57 (47%), Positives = 34/57 (59%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
L+++N AT EQL TLPGV A I+ R GRF V+ L V GIG +L+ LR
Sbjct: 208 LVDLNTATAEQLDTLPGVGPVTAAAILAWRDANGRFSSVEQLGDVDGIGPARLDKLR 264
>UniRef50_Q4L6U1 Cluster: Similar to late competence operon protein
required for DNA binding and uptake ComEA; n=1;
Staphylococcus haemolyticus JCSC1435|Rep: Similar to
late competence operon protein required for DNA binding
and uptake ComEA - Staphylococcus haemolyticus (strain
JCSC1435)
Length = 234
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/81 (37%), Positives = 43/81 (53%)
Frame = +2
Query: 368 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 547
NKS H+ SL S +NIN A+E +L+ +PGV REI+ +RQ F ++D
Sbjct: 158 NKSG--HSKSLNSSST--NKVNINTASEAELLKIPGVGPAKVREIIDYRQKNNTFHSIED 213
Query: 548 LALVSGIGADKLELLRPEICT 610
L + GIG E ++ I T
Sbjct: 214 LKNIKGIGDKTFERIKEYITT 234
>UniRef50_Q9EYL7 Cluster: Competence protein 1; n=12; Listeria
monocytogenes|Rep: Competence protein 1 - Listeria
monocytogenes
Length = 211
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+N+N+AT++ L +PG+ A I+ +R+ G F+ ++DL VSGIG +E L+
Sbjct: 150 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEKLK 205
>UniRef50_Q04B44 Cluster: DNA uptake protein related DNA-binding
protein; n=2; Lactobacillus delbrueckii subsp.
bulgaricus|Rep: DNA uptake protein related DNA-binding
protein - Lactobacillus delbrueckii subsp. bulgaricus
(strain ATCC BAA-365)
Length = 248
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
+L+N+N AT L L G+ + A +I+ +RQ G FK +D+L VSGIG ++ +
Sbjct: 186 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 245
Query: 602 I 604
+
Sbjct: 246 L 246
>UniRef50_A5UT74 Cluster: Helix-hairpin-helix motif precursor; n=2;
Roseiflexus|Rep: Helix-hairpin-helix motif precursor -
Roseiflexus sp. RS-1
Length = 220
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
L+++N AT +L LPG+ LA IV R+ G F+ VDDL V GIG L L P
Sbjct: 157 LLDLNRATVAELDALPGIGSVLANRIVEWREREGPFRSVDDLGKVEGIGPALLAKLAP 214
>UniRef50_A3ZUV0 Cluster: Competence protein ComEA-related protein;
n=1; Blastopirellula marina DSM 3645|Rep: Competence
protein ComEA-related protein - Blastopirellula marina
DSM 3645
Length = 146
Score = 49.2 bits (112), Expect = 1e-04
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 383 SHTFSLPPSEEYPE--LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLAL 556
+H + E P +++IN A +L LPG+ LAR I+ R+ +G F +DL
Sbjct: 50 THWIDIEQVEPQPAAYIVDINQADWPELTQLPGIGETLARRIIESRETLGPFLDHNDLQR 109
Query: 557 VSGIGADKLELLRP 598
V GIG LE LRP
Sbjct: 110 VRGIGPRTLERLRP 123
>UniRef50_Q8DV80 Cluster: Putative competence protein; n=1;
Streptococcus mutans|Rep: Putative competence protein -
Streptococcus mutans
Length = 225
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+N+N AT L T+ G+ + A++I+ +R+ G FK VDDL +SGIG E L+
Sbjct: 164 VNLNTATLADLQTISGIGEKKAQDILDYREANGGFKSVDDLKNISGIGDKTFEKLK 219
>UniRef50_Q3K1S5 Cluster: ComE operon protein 1, putative; n=10;
Streptococcus agalactiae|Rep: ComE operon protein 1,
putative - Streptococcus agalactiae serotype Ia
Length = 217
Score = 48.8 bits (111), Expect = 2e-04
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A L T+ GV + A++I+ +R G FK +DDL VSGIG LE LR ++
Sbjct: 156 INLNKADLSSLQTISGVWAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEKLRQDV 214
>UniRef50_Q2FGD4 Cluster: ComE operon protein 1; n=12;
Staphylococcus aureus|Rep: ComE operon protein 1 -
Staphylococcus aureus (strain USA300)
Length = 228
Score = 48.8 bits (111), Expect = 2e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+N+N A+ +LM++PGV + A IV +R G F+ +DDL V G G+ + L+
Sbjct: 168 VNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFT 227
Query: 608 T 610
T
Sbjct: 228 T 228
>UniRef50_A7I0K9 Cluster: ComE operon protein 1; n=2; Campylobacter
hominis ATCC BAA-381|Rep: ComE operon protein 1 -
Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 /
NCTC 13146 /CH001A)
Length = 83
Score = 48.8 bits (111), Expect = 2e-04
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN A++E+LMTL G+ A I+ +R+ +F +++D+ V GIG K E ++ +I
Sbjct: 19 VNINTASKEELMTLKGIGETTAEAIIEYRKE-NKFTKIEDIKNVKGIGDKKFESIKEDI 76
>UniRef50_A1HQZ8 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Thermosinus
carboxydivorans Nor1|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Thermosinus
carboxydivorans Nor1
Length = 187
Score = 48.8 bits (111), Expect = 2e-04
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A+ +L LPG+ LA+ I+ +RQ IG FK ++++ V GIG K ++ +I
Sbjct: 127 VNVNTASANELDKLPGIGPALAQRIIDYRQSIGGFKDLEEVKKVPGIGEAKFNQIKDKI 185
>UniRef50_Q3A6K8 Cluster: DNA uptake/competence protein; n=1;
Pelobacter carbinolicus DSM 2380|Rep: DNA
uptake/competence protein - Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1)
Length = 128
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
SE +++N+AT +QL LPG+ A IV +R+ G F V+DL V GIG L
Sbjct: 60 SEIATTAVSLNSATAKQLQILPGIGAVTADRIVAYRKAHGPFANVEDLLHVKGIGTQTLS 119
Query: 587 LLRPEI 604
+R I
Sbjct: 120 KIRDRI 125
>UniRef50_Q2Y853 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Nitrosospira
multiformis ATCC 25196|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849)
Length = 99
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLEL 589
+NIN AT+++L TL G+ AR I+ +R G+F+ +DL V GI L++
Sbjct: 22 VNINTATQQELQTLNGITSAKARAIIEYRSKAGKFRTAEDLTKVDGINPRYLDM 75
>UniRef50_Q1JY69 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Competence
protein ComEA helix-hairpin-helix region precursor -
Desulfuromonas acetoxidans DSM 684
Length = 89
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+NIN AT EQL ++ G+ ++ A +IV +R G + VD L + GIG L + ++C
Sbjct: 28 VNINTATVEQLQSVNGIGQKTAEKIVAYRTSHGTYSSVDQLCNIKGIGKASLSKMGDQLC 87
>UniRef50_A7JQX9 Cluster: Possible competence protein; n=1;
Mannheimia haemolytica PHL213|Rep: Possible competence
protein - Mannheimia haemolytica PHL213
Length = 209
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+NIN A EEQL +L G+ A+ IV +R+ G+ K +LA + GIG +E + P
Sbjct: 149 VNINTANEEQLQSLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAP 205
>UniRef50_A6WDK9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Kineococcus radiotolerans SRS30216|Rep: Competence
protein ComEA helix-hairpin-helix repeat protein
precursor - Kineococcus radiotolerans SRS30216
Length = 304
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+++NAAT E+L LPGV LA IV R+ G F+ V+DL V GIG L+ LR
Sbjct: 244 LDLNAATPEELDGLPGVGEVLAGRIVAWREENGPFRDVEDLGEVPGIGPKVLDGLR 299
>UniRef50_A1A1R1 Cluster: Putative uncharacterized protein; n=2;
Bifidobacterium adolescentis|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
(strain ATCC 15703 / DSM 20083)
Length = 253
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+++N A +L TL GV A+ I+ +R IGRF VD L V GIG+ L R ++C
Sbjct: 192 LDLNTADLGELQTLKGVGPVTAQRILDYRTQIGRFDNVDQLLEVKGIGSKTLAKFRDQVC 251
>UniRef50_UPI00005876FC Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 363
Score = 48.0 bits (109), Expect = 3e-04
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +2
Query: 386 HTFSLPPSEEYPELMNI-NAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVS 562
H +L P+++ +L+N+ N+A E +L + +N ++A I+ HR+ G+ R+++L ++
Sbjct: 65 HETTLTPADQTEKLVNVLNSAPESELKMVKYINSKMAAGIIAHREEKGQISRLEELLVIP 124
Query: 563 GIGADKLELLRPEICT----HTRKQLSRASSCAHSLDSIRLPSESRLCSIN 703
G+G L+ L TR ++ S+ L + RL S + +I+
Sbjct: 125 GVGRRILDKLLTSFANGKQEKTRTRIDPQSTSHTDLSNERLSSLKDVVAID 175
>UniRef50_Q2LTK2 Cluster: DNA-binding protein, ComEA family; n=1;
Syntrophus aciditrophicus SB|Rep: DNA-binding protein,
ComEA family - Syntrophus aciditrophicus (strain SB)
Length = 204
Score = 48.0 bits (109), Expect = 3e-04
Identities = 18/60 (30%), Positives = 40/60 (66%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+++N+A+ +L +PG+ + A++I+ R G+F +++++ ++GI KL+ LRP +C
Sbjct: 141 IDVNSASMAELELVPGIGEKTAQKIIEARNQKGKFHKLEEMMKINGIKQKKLDKLRPFLC 200
>UniRef50_Q41FK3 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1;
Exiguobacterium sibiricum 255-15|Rep: Competence protein
ComEA helix-hairpin-helix region precursor -
Exiguobacterium sibiricum 255-15
Length = 205
Score = 48.0 bits (109), Expect = 3e-04
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 362 KLNKSSLSHTFSLPPSEEYPE-LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKR 538
K KSS E P+ L+++NAATEEQL+ +PG+ A I+++R+ G F
Sbjct: 121 KKAKSSKKAAPETSEQAEIPKGLLDLNAATEEQLLEVPGIGPAKAGAILQYREEKGGFAT 180
Query: 539 VDDLALVSGIGADKLELLR 595
++L V G G LE L+
Sbjct: 181 YENLGDVKGFGPKTLENLK 199
>UniRef50_A6NW57 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 147
Score = 48.0 bits (109), Expect = 3e-04
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 410 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
E+ L+NIN A E L TLP + + A I+ +R+ G F+ V+D+ VSGIG
Sbjct: 80 EQQSGLININTADSETLQTLPSIGEKRAAAIIAYREEHGPFRIVEDITNVSGIG 133
>UniRef50_A6L0G4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 300
Score = 48.0 bits (109), Expect = 3e-04
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Frame = +2
Query: 371 KSSLSHTFSLPPSEEYP-ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 547
K SL +++ P E + N+A + + G+ +A I+++R+ G+F+ DD
Sbjct: 63 KESLRYSYDKPKRREVVLAAFDPNSADSIEFLQR-GLPPFIAHTILQYRRAGGKFRTADD 121
Query: 548 LALVSGIGADKLELLRPEIC---THTRKQ--LSRASSCAHSLDSIRLPSESRLCSINSSS 712
+ V G+ ++K +L+P I RKQ L ++ E L +N +
Sbjct: 122 FSRVYGLSSEKFNMLKPYIQISEAFRRKQDTLHFIKKAEKDTLAVYKYPEGTLVDLNEAD 181
Query: 713 VFQLQCVPGLNQEIAANIVXYR 778
+L+ +PG+ IA IV YR
Sbjct: 182 TTELKKIPGIGSGIARMIVAYR 203
>UniRef50_Q9X0E2 Cluster: ComEA protein-related protein; n=2;
Thermotoga|Rep: ComEA protein-related protein -
Thermotoga maritima
Length = 181
Score = 47.6 bits (108), Expect = 4e-04
Identities = 33/117 (28%), Positives = 58/117 (49%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+ +N A+ E LM++PG+ A+ I+ +R+ G F V++L VSGIG LE + +
Sbjct: 47 VELNTASLEDLMSIPGIGPVKAQRIIDYRESHGGFSSVEELKNVSGIGEKTLEKISRYVT 106
Query: 608 THTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVXYR 778
+Q + E ++N++SV +L+ +P + + A IV YR
Sbjct: 107 VEGVEQ--------------HIKREVTKLNVNTASVEELETLPYIGEVKAKAIVEYR 149
Score = 47.6 bits (108), Expect = 4e-04
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A+ E+L TLP + A+ IV +R+ G F+ +DL V GIG LE +R +I
Sbjct: 121 LNVNTASVEELETLPYIGEVKAKAIVEYREKNGPFRSPEDLLDVPGIGEKTLEKIRGKI 179
>UniRef50_Q8DGH8 Cluster: Tll2339 protein; n=9; Cyanobacteria|Rep:
Tll2339 protein - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 565
Score = 47.6 bits (108), Expect = 4e-04
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N AT +L TLPGV +LA EI+R R+ F+ + DL V G+G LE LR +
Sbjct: 506 VNLNTATAAELETLPGVGSKLAAEIIRAREH-KPFQSLADLDAVPGVGPKLLERLRDRV 563
>UniRef50_Q8DG32 Cluster: DNA uptake protein; n=11; Vibrio|Rep: DNA
uptake protein - Vibrio vulnificus
Length = 91
Score = 47.6 bits (108), Expect = 4e-04
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +2
Query: 428 MNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN AT E++ M L GV + A++IV R+ G FK VD+LA V GIG +E
Sbjct: 30 VNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDELAQVKGIGKSTIE 83
>UniRef50_Q7WGV0 Cluster: Putative uncharacterized protein; n=2;
Bordetella|Rep: Putative uncharacterized protein -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 194
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA-LVSGIGADKLELLR 595
+++N AT +QL T+ GV + AR I+ RQ GRF ++DL+ VSGIG K++ L+
Sbjct: 105 LDVNTATVDQLETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGLKKMQSLQ 161
>UniRef50_Q9EYM5 Cluster: Competence factor ComEA; n=3; Thermus
thermophilus|Rep: Competence factor ComEA - Thermus
thermophilus
Length = 298
Score = 47.6 bits (108), Expect = 4e-04
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+++N A+ E+LM LPG+ LAR IV R + RV+DL V GIG LE LRP
Sbjct: 242 VSLNEASLEELMALPGIGPVLARRIVEGRP----YARVEDLLKVKGIGPATLERLRP 294
>UniRef50_Q1QVK1 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1;
Chromohalobacter salexigens DSM 3043|Rep: Competence
protein ComEA helix-hairpin-helix region precursor -
Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB13768)
Length = 90
Score = 47.6 bits (108), Expect = 4e-04
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +2
Query: 410 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
E P+ ++IN AT E L LPG+ A+ IV R+ G F ++DL VSGIG
Sbjct: 24 ENAPQAIDINHATAETLAELPGIGEVKAQAIVEDREANGPFASLEDLTRVSGIG 77
>UniRef50_A4XKH1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Competence protein ComEA helix-hairpin-helix repeat
protein - Caldicellulosiruptor saccharolyticus (strain
ATCC 43494 / DSM 8903)
Length = 214
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN A++E+L TL + +LA I+ +RQ G FK ++++ V+GIG E ++ I
Sbjct: 153 ININTASKEELKTLDRIGDKLAERIIEYRQEHGPFKSIEEIKNVNGIGDKIFEAIKDSI 211
>UniRef50_Q39UG7 Cluster: DNA uptake protein and related DNA-binding
proteins-like; n=1; Geobacter metallireducens GS-15|Rep:
DNA uptake protein and related DNA-binding proteins-like
- Geobacter metallireducens (strain GS-15 / ATCC 53774 /
DSM 7210)
Length = 192
Score = 47.2 bits (107), Expect = 5e-04
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +2
Query: 446 TEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG---ADKLELLRPEICTH 613
TE + LPG+ LAR IV RQ G F+ + DL VSGIG DKLE P TH
Sbjct: 134 TESEWELLPGIGPTLARRIVFDRQYNGGFRSIRDLERVSGIGKVTVDKLERYFPNTVTH 192
>UniRef50_Q2JDK7 Cluster: Helix-hairpin-helix DNA-binding, class 1;
n=2; Frankia|Rep: Helix-hairpin-helix DNA-binding, class
1 - Frankia sp. (strain CcI3)
Length = 422
Score = 47.2 bits (107), Expect = 5e-04
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+++NAAT E+L LPGV LAR IV R G F+ + LA V+G+G +L L P
Sbjct: 362 IDLNAATAEELDGLPGVGPVLARRIVEWRTAHGPFRSPEQLAEVTGVGDKRLADLLP 418
>UniRef50_A0RNB7 Cluster: Conserved domain protein; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: Conserved
domain protein - Campylobacter fetus subsp. fetus
(strain 82-40)
Length = 134
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/78 (28%), Positives = 43/78 (55%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+N+N AT+E+LM LPG+ A I+ +R+ FK +D++ + GI + +++ ++
Sbjct: 28 VNLNTATKEELMALPGIGEINANAIIEYRKHT-EFKSIDEIKNIKGISNKRFNVIKADLA 86
Query: 608 THTRKQLSRASSCAHSLD 661
T ++ S A+ D
Sbjct: 87 TTGNTDINSIKSKANIKD 104
>UniRef50_Q1WU47 Cluster: ComE operon protein 1; n=1; Lactobacillus
salivarius subsp. salivarius UCC118|Rep: ComE operon
protein 1 - Lactobacillus salivarius subsp. salivarius
(strain UCC118)
Length = 229
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+N+N AT+EQL L G+ + A I+ +R G+FK +D+L VSGIG
Sbjct: 169 INLNTATKEQLTQLNGIGDKKAELIISYRDEHGKFKTIDELKNVSGIG 216
>UniRef50_Q0LPE0 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Herpetosiphon
aurantiacus ATCC 23779|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Herpetosiphon
aurantiacus ATCC 23779
Length = 228
Score = 47.2 bits (107), Expect = 5e-04
Identities = 24/66 (36%), Positives = 37/66 (56%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
S P L+NIN A+ +L +LP + + +A+ IV +R+ G F ++ L V GIGA
Sbjct: 160 SARQPTLININTASAAELESLPKIGQAIAQRIVAYREENGPFTTIEALQEVKGIGASTFA 219
Query: 587 LLRPEI 604
+ P I
Sbjct: 220 EIEPFI 225
>UniRef50_A4F9N2 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=3; Bacteria|Rep:
Competence protein ComEA helix-hairpin-helix region -
Saccharopolyspora erythraea (strain NRRL 23338)
Length = 200
Score = 47.2 bits (107), Expect = 5e-04
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+++N ATEEQ LPGV A+ IV+ R GRF V+ L V GIG + LR
Sbjct: 140 IDLNTATEEQFDELPGVGEVTAKRIVQWRTENGRFASVEQLREVDGIGDTRFSRLR 195
>UniRef50_A4AAS4 Cluster: Putative uncharacterized protein; n=1;
Congregibacter litoralis KT71|Rep: Putative
uncharacterized protein - Congregibacter litoralis KT71
Length = 110
Score = 47.2 bits (107), Expect = 5e-04
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 410 EEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
EE ++NIN+AT +L L G+ A IVR+R+ G F+ +D+L+ V+GIGA +E
Sbjct: 42 EEQSAVVNINSATALELAEGLTGIGGSKAEAIVRYREEFGPFESIDELSEVTGIGAATVE 101
Query: 587 LLRPEI 604
R +
Sbjct: 102 RNRQRL 107
>UniRef50_A2UAV6 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=2;
Bacillus|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor - Bacillus
coagulans 36D1
Length = 238
Score = 47.2 bits (107), Expect = 5e-04
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
S E +NIN A + QL TLPG+ A I+ +R+ G F++ +DL VSGIG
Sbjct: 170 SGEAAAQVNINTADQTQLETLPGIGPSKAAAIIEYREKNGPFQKPEDLKNVSGIG 224
>UniRef50_Q92BM9 Cluster: ComEA protein; n=2; Listeria|Rep: ComEA
protein - Listeria innocua
Length = 200
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
S + + +NIN+AT+ L +PG+ A I+ +R+ G F+ ++DL V+GIG +E
Sbjct: 132 SSDTDKKVNINSATKIDLQQVPGIGDSKATAIIEYREKEGLFQTIEDLKNVTGIGEKTVE 191
Query: 587 LLR 595
L+
Sbjct: 192 KLK 194
>UniRef50_Q83MW2 Cluster: ComE operon protein 1-like protein; n=2;
Tropheryma whipplei|Rep: ComE operon protein 1-like
protein - Tropheryma whipplei (strain Twist) (Whipple's
bacillus)
Length = 193
Score = 46.8 bits (106), Expect = 6e-04
Identities = 20/67 (29%), Positives = 39/67 (58%)
Frame = +2
Query: 404 PSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
P + +NIN A ++L ++ G+ + A+ I+ R G FKR++DL +SGIG +
Sbjct: 125 PKDSESSPVNINTADAQRLQSIKGIGKATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLI 184
Query: 584 ELLRPEI 604
+ ++ ++
Sbjct: 185 KSIKDKV 191
>UniRef50_Q3IE25 Cluster: Putative uncharacterized protein; n=2;
Alteromonadales|Rep: Putative uncharacterized protein -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 99
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG---ADKLE 586
+NIN A QL LPG+ ++ A+ I+ +R+ G F ++DL +V GIG A KLE
Sbjct: 39 LNINTADVSQLSKLPGIGKKKAQAIIDYREAKGNFTSLEDLKMVKGIGKKLAAKLE 94
>UniRef50_Q2RKY9 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Moorella thermoacetica
ATCC 39073|Rep: Competence protein ComEA
helix-hairpin-helix region - Moorella thermoacetica
(strain ATCC 39073)
Length = 224
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+NIN A +L +LPG+ LA+ I+ +R G F+ ++DL VSGIGA K L+
Sbjct: 163 VNINTAGLAELDSLPGIGPTLAQRILDYRTQKGPFRTIEDLQNVSGIGAKKFADLK 218
>UniRef50_Q1AVU6 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 107
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+ E P +++IN A E+L LP V A I+ +R G F+ V++L V GIG LE
Sbjct: 40 AREEPLVVDINTADAEELEELPEVGPATAEAIIEYRLANGPFRTVEELEEVPGIGPATLE 99
Query: 587 LLRP 598
+RP
Sbjct: 100 QIRP 103
>UniRef50_A7GY27 Cluster: Conserved domain protein; n=1;
Campylobacter curvus 525.92|Rep: Conserved domain
protein - Campylobacter curvus 525.92
Length = 115
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/61 (37%), Positives = 38/61 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+N+N AT+E+LM+L G+ A I+ +R+ +F ++DL V+GIG E L+ +I
Sbjct: 4 VNLNTATKEELMSLDGIGSSKADAIIEYRKA-NKFDSIEDLKKVNGIGDKTYENLKSDIS 62
Query: 608 T 610
T
Sbjct: 63 T 63
>UniRef50_Q8A1M0 Cluster: Putative uncharacterized protein; n=5;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides thetaiotaomicron
Length = 309
Score = 46.4 bits (105), Expect = 8e-04
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Frame = +2
Query: 401 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
P E P + N A ++L G+ +A I+R+R+ GRF+R +D + G+ ++
Sbjct: 83 PKKEIRPAAFDPNTADSATFLSL-GLPTWMAGNILRYRRKQGRFRRPEDFRKIYGLTEEQ 141
Query: 581 LELLRPEIC---THTRKQLSR--ASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLN 745
L+P I T + SR D++ + +N + +L+ +PG+
Sbjct: 142 YRTLQPYIRIAETPVLQDTSRILVVQATAPYDTLMKYPPGTIIDLNQADTTELKKIPGIG 201
Query: 746 QEIAANIVXYR 778
IA +IV +R
Sbjct: 202 SRIARSIVNHR 212
Score = 41.5 bits (93), Expect = 0.023
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +2
Query: 413 EYPE--LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
+YP ++++N A +L +PG+ ++AR IV HR+++G F +++ L + + A+KL
Sbjct: 177 KYPPGTIIDLNQADTTELKKIPGIGSRIARSIVNHRRLLGGFYQIEQLGEIR-LKAEKL 234
>UniRef50_Q88VD0 Cluster: ComE operon protein 1; n=2;
Lactobacillales|Rep: ComE operon protein 1 -
Lactobacillus plantarum
Length = 241
Score = 46.4 bits (105), Expect = 8e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+N+N A L TL G+ ++ A +I+ +RQ G FK +DDL VSG G
Sbjct: 181 VNLNTADVAALQTLSGIGQKKAEKIIDYRQQHGNFKTIDDLKNVSGFG 228
>UniRef50_Q6A9B7 Cluster: ComE operon protein 1; n=1;
Propionibacterium acnes|Rep: ComE operon protein 1 -
Propionibacterium acnes
Length = 283
Score = 46.4 bits (105), Expect = 8e-04
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+++N A + +L T+ GV +A +I+ RQ G+F VD L +SGIGA E ++P +
Sbjct: 223 VDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEKIKPYV 281
>UniRef50_Q3WBP6 Cluster: Helix-hairpin-helix motif precursor; n=1;
Frankia sp. EAN1pec|Rep: Helix-hairpin-helix motif
precursor - Frankia sp. EAN1pec
Length = 250
Score = 46.4 bits (105), Expect = 8e-04
Identities = 26/57 (45%), Positives = 32/57 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+N+N AT EQL LPGV LA+ I+ R G F D L VSG+G +L L P
Sbjct: 190 LNLNTATVEQLDALPGVGPVLAQRIIDWRAANGPFTSPDQLGEVSGVGDRRLADLLP 246
>UniRef50_Q1IVK9 Cluster: Putative uncharacterized protein
precursor; n=1; Acidobacteria bacterium Ellin345|Rep:
Putative uncharacterized protein precursor -
Acidobacteria bacterium (strain Ellin345)
Length = 513
Score = 46.4 bits (105), Expect = 8e-04
Identities = 20/65 (30%), Positives = 40/65 (61%)
Frame = +2
Query: 401 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
P SEE P N+N A+ E++ TLP +++ A+ +VR R+ G F+ +D++ + + +
Sbjct: 434 PGSEEAPLRTNLNTASAEEIATLPQFSKETAQAMVRERRQRGYFRSIDEVISSAKLNPGQ 493
Query: 581 LELLR 595
E+++
Sbjct: 494 AEVIK 498
>UniRef50_A7BDT8 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 231
Score = 46.4 bits (105), Expect = 8e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+ + ATE +L TLPG+ LA+ I+ +R R V++L V GIG +E +R +C
Sbjct: 172 VRLATATEAELQTLPGIGPSLAQRIISYRATHPRLSTVEELDDVPGIGPSLIEKIRTGVC 231
>UniRef50_Q9KD84 Cluster: Late competence operon required for DNA
binding and uptake; n=1; Bacillus halodurans|Rep: Late
competence operon required for DNA binding and uptake -
Bacillus halodurans
Length = 210
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+++ +N ATE +L +LPG+ A I+ +R+ G F +++L VSGIG E L P
Sbjct: 147 QMVVLNRATEVELQSLPGIGPAKATAIISYREEHGAFSSLEELMNVSGIGEKSYEKLAP 205
>UniRef50_Q1FL89 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Clostridium
phytofermentans ISDg|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Clostridium
phytofermentans ISDg
Length = 238
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 568
+NIN AT+E+LMT+PG+ A I+ +R G F +++L +SGI
Sbjct: 176 VNINKATKEELMTIPGIGEAKALSIISYRTEHGLFSTIEELQNISGI 222
>UniRef50_A0JX55 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Arthrobacter
sp. FB24|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Arthrobacter sp.
(strain FB24)
Length = 326
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+++N+A+ E+L LP V LA+ IV R+ GRF V++L V G+G LE L P
Sbjct: 265 IDLNSASAEELGALPRVGPVLAQRIVDWRKEHGRFSTVEELDAVDGVGPKMLETLLP 321
>UniRef50_Q66DS9 Cluster: Possible DNA uptake protein ComEA related
protein precursor; n=12; Yersinia|Rep: Possible DNA
uptake protein ComEA related protein precursor -
Yersinia pseudotuberculosis
Length = 148
Score = 45.6 bits (103), Expect = 0.001
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = +2
Query: 293 QSPSSMRNKNGXXXXXXXXXXXXKL--NKSSLSHTFSLPPSEEYPELMNINAATEEQL-M 463
+SP+S + NG K+ N +++ S+ S+ +NIN+A EQL
Sbjct: 41 KSPNSAAD-NGAKVKGTPAQSVEKISDNTKNVAADSSVNASDNQQHQININSANAEQLAQ 99
Query: 464 TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
L G+ R+ A I+ +R+ G F VD L V G+G LE
Sbjct: 100 FLNGIGRKKAEAIITYREQSGPFTHVDQLLEVPGLGPSFLE 140
>UniRef50_Q55769 Cluster: ComE ORF1; n=1; Synechocystis sp. PCC
6803|Rep: ComE ORF1 - Synechocystis sp. (strain PCC
6803)
Length = 553
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L+N+N ++E+L +LPG+ A +I+ R+ F ++DL V GIG K+E LR ++
Sbjct: 493 LVNLNRGSQEELESLPGIGPSTAEKIISTREQ-KAFTSLEDLGRVKGIGPSKIEGLRGKV 551
>UniRef50_Q0YG37 Cluster: Helix-hairpin-helix motif precursor; n=2;
Geobacter|Rep: Helix-hairpin-helix motif precursor -
Geobacter sp. FRC-32
Length = 170
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 377 SLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLAL 556
S +H S Y +NIN A+ LPG+ + I++ R+ +GRF + D+
Sbjct: 18 SFTHVASAKVLRTYQGKLNINTASAADFARLPGIGNVIGFHIIKEREQLGRFSAIKDITS 77
Query: 557 VSGIGADKLELLR 595
V GI E ++
Sbjct: 78 VKGIKPRVFETIK 90
>UniRef50_A5WC41 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Psychrobacter sp. PRwf-1|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Psychrobacter sp. PRwf-1
Length = 126
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+++N+ATE +L L G+ A++I+ +R G F VDDLA V GIG
Sbjct: 65 VHLNSATEGELTQLTGIGSNKAQQIILYRDAFGPFGSVDDLAKVKGIG 112
>UniRef50_A4BM59 Cluster: Unspecific high-affinity DNA-binding
protein; n=1; Nitrococcus mobilis Nb-231|Rep: Unspecific
high-affinity DNA-binding protein - Nitrococcus mobilis
Nb-231
Length = 105
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +2
Query: 398 LPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGAD 577
L P+ + +NIN A + L L GV A+ IV +R+ GRF+ + DL V GIG
Sbjct: 34 LMPALAFGAKININKAGVQTLQELDGVGPSKAQAIVTYRERNGRFQALTDLTKVRGIGEQ 93
Query: 578 KLELLRPEI 604
L+ R +I
Sbjct: 94 TLDANRDQI 102
>UniRef50_Q60AS7 Cluster: Putative competence protein ComE; n=1;
Methylococcus capsulatus|Rep: Putative competence
protein ComE - Methylococcus capsulatus
Length = 116
Score = 45.2 bits (102), Expect = 0.002
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 416 YPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 592
+ E ++IN+AT E++ T+ GV + A IV+ R+ G FK VDDL V GI L
Sbjct: 18 WAEPLDINSATAEEIAATMTGVGKAKAEAIVKDREAHGNFKSVDDLKRVKGIKEGILAKN 77
Query: 593 RPEICTHTRKQLSRASSCA 649
R +I S A + A
Sbjct: 78 RDKITVKADTAASPAPAAA 96
>UniRef50_Q5H3A8 Cluster: DNA transport competence protein; n=11;
Xanthomonadaceae|Rep: DNA transport competence protein -
Xanthomonas oryzae pv. oryzae
Length = 135
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 428 MNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
++IN A+ E+L L V R A IV HRQ G FK ++LALV GIG +E
Sbjct: 52 VDINTASAEELDKVLVNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVE 105
>UniRef50_Q5FKS5 Cluster: Competence protein; n=4;
Lactobacillus|Rep: Competence protein - Lactobacillus
acidophilus
Length = 227
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A +L L G+ + A +I+ +R+ G F++++DL VSGIG L+ ++
Sbjct: 167 VNLNTANITELQKLTGIGEKKAEQIIAYREQNGSFQKIEDLMQVSGIGEKTFASLKDQL 225
>UniRef50_Q4JLN0 Cluster: Lr0776; n=3; Lactobacillus reuteri|Rep:
Lr0776 - Lactobacillus reuteri
Length = 210
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/59 (33%), Positives = 37/59 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N AT+EQL + G+ + A I+++RQ G+FK +D+L ++G G + L+ +
Sbjct: 150 INLNTATKEQLCQITGIGDKKADLILQYRQEHGQFKSIDELKEINGFGEKTVAKLKDHL 208
>UniRef50_Q8Y8F9 Cluster: Lmo0945 protein; n=13; Listeria|Rep:
Lmo0945 protein - Listeria monocytogenes
Length = 376
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +2
Query: 368 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 547
NK + + SEE PE +N+N A+ E L LP + LA +I+ R ++ +DD
Sbjct: 297 NKENSTQKTEDATSEELPESINLNTASSEDLQLLPLIGPALAEKIIAERP----YQSIDD 352
Query: 548 LALVSGIG 571
L ++GIG
Sbjct: 353 LKKINGIG 360
>UniRef50_Q478W5 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=2;
Betaproteobacteria|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Dechloromonas
aromatica (strain RCB)
Length = 105
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N AT ++L + G+ A+ IV +R G FK VDDL V G G + LR E+
Sbjct: 34 VNLNTATVDELDGVKGIGPSKAKAIVDYRTKNGSFKSVDDLKGVKGFGEKSIAKLRSEL 92
>UniRef50_Q1CY14 Cluster: Competence protein comEA; n=1; Myxococcus
xanthus DK 1622|Rep: Competence protein comEA -
Myxococcus xanthus (strain DK 1622)
Length = 116
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A+ +L LPGV + A+ I+ HRQ FKRV++L V G G K L+ +
Sbjct: 32 VNLNEASAAELDLLPGVGEKAAQRIIEHRQK-RPFKRVEELVRVKGFGKKKFLKLKAHL 89
>UniRef50_A7HBX1 Cluster: DNA uptake protein; n=2;
Anaeromyxobacter|Rep: DNA uptake protein -
Anaeromyxobacter sp. Fw109-5
Length = 148
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 437 NAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
N AT +L +PG++R+LA E+V R G F V+ L V GIG +L RP +
Sbjct: 89 NRATARELAFVPGLSRRLAAEVVADRTRNGPFPDVESLLRVRGIGPKRLARARPAL 144
>UniRef50_A6ESZ6 Cluster: ComEA protein-related protein; n=1;
unidentified eubacterium SCB49|Rep: ComEA
protein-related protein - unidentified eubacterium SCB49
Length = 293
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
E MN+N A+ + T+ G++ LA+EI +R + + +D+LA + GI KL L++
Sbjct: 230 EKMNVNTASASDIATIKGISFDLAKEIWEYRVLREQILSLDELATIDGITTSKLNLIK 287
>UniRef50_A4SJ96 Cluster: ComEA protein; n=3; Aeromonas|Rep: ComEA
protein - Aeromonas salmonicida (strain A449)
Length = 106
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A+ +L L G+ + A+ IV RQ G+F V+ LA VSGIG LE R I
Sbjct: 45 VNLNTASINELTALKGIGEKKAQAIVDFRQKQGKFTTVEQLADVSGIGPATLEANRDMI 103
>UniRef50_A3TJH6 Cluster: Putative DNA-binding protein; n=1;
Janibacter sp. HTCC2649|Rep: Putative DNA-binding
protein - Janibacter sp. HTCC2649
Length = 258
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+++N+A L TLPGV LA+ I+ R GRF V++L VSGIG L L P++
Sbjct: 198 VSLNSADLSALDTLPGVGPVLAQRILDWRTEHGRFTSVEELGEVSGIGEKLLAQLTPKV 256
>UniRef50_Q5P3B5 Cluster: ComE operon protein 1-related protein;
n=1; Azoarcus sp. EbN1|Rep: ComE operon protein
1-related protein - Azoarcus sp. (strain EbN1)
(Aromatoleum aromaticum (strain EbN1))
Length = 155
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +2
Query: 377 SLSHTFSLPPSEEYPEL-MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA 553
SL +L P E +++N+A L T+ G+ A+ I+ +R+ G F VDDL
Sbjct: 66 SLLFALALSPLVALAEAPVDVNSADAATLETVKGIGPAKAKAIIEYRKANGAFASVDDLT 125
Query: 554 LVSGIGADKLELLRPEICT-HTRKQLSRA 637
V GIG + LR +I +KQ++++
Sbjct: 126 KVPGIGDKSVAQLREQITVGSAKKQVAKS 154
>UniRef50_A6BGR9 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 255
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/59 (33%), Positives = 37/59 (62%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++IN A +++LMTL G+ A I+R+R G+F++++DL V GI + ++ +I
Sbjct: 195 VDINTAGKDELMTLSGIGEAKADAIIRYRDEHGKFQKIEDLMEVEGIKDGVFQKVKDQI 253
>UniRef50_A4CD31 Cluster: Putative uncharacterized protein; n=1;
Pseudoalteromonas tunicata D2|Rep: Putative
uncharacterized protein - Pseudoalteromonas tunicata D2
Length = 101
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +2
Query: 404 PSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
P + +L+NIN A + L +LPG+ + A I+ +R+ G F + DL V GIG DK+
Sbjct: 33 PVKMVSDLININTADLKTLQSLPGLGKTKAAAIIAYREQFGEFASLADLKNVKGIG-DKV 91
>UniRef50_A0Z742 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2080|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2080
Length = 114
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 392 FSLPPSEEYPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 568
FS PP +NIN A+ E L +L G+ A IV HR+ G F+ +D+L V GI
Sbjct: 40 FSSPPVFSQSSQVNINTASPELLSDSLLGIGLAKAYRIVEHRESYGPFESIDELVEVKGI 99
Query: 569 G 571
G
Sbjct: 100 G 100
>UniRef50_A7T0R6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 540
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 568
L+N+N ATEE+L + G +++ IV+HR+ G F V++L ++ G+
Sbjct: 175 LVNVNTATEEELERIKGFGPAVSKNIVKHREEHGPFGNVEELIVIRGV 222
>UniRef50_Q18Q70 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=2;
Desulfitobacterium hafniense|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein -
Desulfitobacterium hafniense (strain DCB-2)
Length = 208
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
L+NIN A +L LPG+ LA I+++R G F + +DL VSGIG
Sbjct: 145 LININTADAAELDKLPGIGPALAERIIQYRMEHGLFLQPEDLKKVSGIG 193
>UniRef50_A5KJM8 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 225
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN A +E+LMTL GV A+ I+ +R+ G F+ +++L + GI ++ +I
Sbjct: 165 ININTAEKEELMTLTGVGEAKAQSIIAYREEHGGFQSIEELMQIEGIKEGVFNKIKEDI 223
>UniRef50_Q8EPV5 Cluster: Late competence protein; n=1;
Oceanobacillus iheyensis|Rep: Late competence protein -
Oceanobacillus iheyensis
Length = 198
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+ IN A+ +++ LPG+ A I ++R+ G F+ ++DL +SGIG +E LR I
Sbjct: 137 IRINYASVQEIEQLPGIGPSKAETIFQYREENGLFRELEDLLNISGIGEKTIESLRDYI 195
>UniRef50_Q1PXY4 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 196
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +2
Query: 410 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLEL 589
E+ ++IN + +L+ LP V A+ IV +R+ GRF+ +D+L+ + GIG + L
Sbjct: 118 EDIKTKIDINESPWYELLLLPKVGEAKAKAIVAYREKYGRFESLDELSRIDGIGKKIIAL 177
Query: 590 LR 595
L+
Sbjct: 178 LK 179
>UniRef50_Q1NXG4 Cluster: Phospholipase D/Transphosphatidylase
precursor; n=2; delta proteobacterium MLMS-1|Rep:
Phospholipase D/Transphosphatidylase precursor - delta
proteobacterium MLMS-1
Length = 288
Score = 43.6 bits (98), Expect = 0.006
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +2
Query: 419 PELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
P ++IN AT +L LP V AR IV +RQ G F +++L +G LE +RP
Sbjct: 35 PGSVDINRATVAELQELPFVGEVRARAIVEYRQQEGPFTELEELLASQAVGHRTLEAIRP 94
>UniRef50_Q03QM7 Cluster: DNA uptake protein related DNA-binding
protein; n=1; Lactobacillus brevis ATCC 367|Rep: DNA
uptake protein related DNA-binding protein -
Lactobacillus brevis (strain ATCC 367 / JCM 1170)
Length = 231
Score = 43.6 bits (98), Expect = 0.006
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++N+N AT +L L G+ + A++IV +R G F+ V DLA V G G + L+ ++
Sbjct: 170 VVNLNTATVTELQQLTGIGEKKAQKIVDYRTDHGHFQSVKDLAQVPGFGEKTVANLQDQL 229
Query: 605 CT 610
T
Sbjct: 230 TT 231
>UniRef50_A6PJD0 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Shewanella sediminis HAW-EB3
Length = 105
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +2
Query: 401 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
P S+ +NIN A+ ++L+ L G+ A+ I+ +R G+F ++DL V GIG
Sbjct: 36 PQSQHQSINININTASVQELVLLNGIGESKAQAIIDYRTSHGQFDSINDLVKVKGIGTKL 95
Query: 581 LE 586
+E
Sbjct: 96 VE 97
>UniRef50_A3XGR6 Cluster: Putative uncharacterized protein; n=1;
Leeuwenhoekiella blandensis MED217|Rep: Putative
uncharacterized protein - Leeuwenhoekiella blandensis
MED217
Length = 290
Score = 43.6 bits (98), Expect = 0.006
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
E +N+N A L T+P + ++AR+I+ +R + +DDL + GI A KL+ ++
Sbjct: 225 EKLNVNTANASDLATIPYITFEIARDIIDYRTLHEGVSNLDDLLKIDGITAYKLDRIKLY 284
Query: 602 ICTH 613
+ T+
Sbjct: 285 LSTN 288
>UniRef50_A0X4V8 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella pealeana ATCC 700345|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Shewanella pealeana ATCC 700345
Length = 105
Score = 43.6 bits (98), Expect = 0.006
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
EL+ IN+AT +L +L G+ A IV +R+ G F V++L V GIG ++ R +
Sbjct: 43 ELVKINSATAAELSSLNGIGEAKATAIVEYRKAHGNFSSVEELTNVKGIGEKLVDKNRSQ 102
Query: 602 I 604
+
Sbjct: 103 L 103
>UniRef50_Q9RXU9 Cluster: Putative uncharacterized protein; n=1;
Deinococcus radiodurans|Rep: Putative uncharacterized
protein - Deinococcus radiodurans
Length = 123
Score = 42.7 bits (96), Expect = 0.010
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA-LVSGIGADKLELLRP 598
+N+N AT QLMTLPGV+ ++A EI++ R +K +L V GIG + ++ + P
Sbjct: 66 VNVNTATAAQLMTLPGVSNKIAAEIIKDRP----YKNAAELVKKVKGIGKNNVKPMTP 119
>UniRef50_Q65RQ5 Cluster: ComEA protein; n=2; Pasteurellaceae|Rep:
ComEA protein - Mannheimia succiniciproducens (strain
MBEL55E)
Length = 161
Score = 42.7 bits (96), Expect = 0.010
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 404 PSEEYPELMNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
P++ +NIN AT E++ TL G+ + A I+++R+ G F V+ L + GIG
Sbjct: 92 PADNIGNTVNINTATAEEIKQTLIGIGAKKAEAIIQYREKHGNFTNVEQLLEIQGIGEAT 151
Query: 581 LE 586
L+
Sbjct: 152 LD 153
>UniRef50_A6FES4 Cluster: ComEA; n=1; Moritella sp. PE36|Rep: ComEA
- Moritella sp. PE36
Length = 129
Score = 42.7 bits (96), Expect = 0.010
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN AT+ +L LPG+ A +I++ R+ G F DL V GIG + L I
Sbjct: 66 LNINTATQLELTALPGIGTYKAAQIIQWREHNGEFVTTTDLVNVKGIGKGTITKLAGRI 124
>UniRef50_A3Y3S0 Cluster: DNA uptake protein; n=10; Vibrionales|Rep:
DNA uptake protein - Vibrio sp. MED222
Length = 99
Score = 42.7 bits (96), Expect = 0.010
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 428 MNINAATEEQLMTL-PGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+NIN AT E+L L GV + A+EIV +R G F DDL V GIG
Sbjct: 38 VNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLVSVKGIG 86
>UniRef50_A0J9L7 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella woodyi ATCC 51908|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Shewanella woodyi ATCC 51908
Length = 107
Score = 42.7 bits (96), Expect = 0.010
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN A L+ L G+ A+ I+ RQ G FK V +L V GIGA +E
Sbjct: 47 ININTAQVADLVRLKGIGEAKAKAIIEFRQANGNFKAVKELEQVKGIGAKLVE 99
>UniRef50_A5FP79 Cluster: DNA uptake protein and related DNA-binding
protein-like protein precursor; n=3;
Dehalococcoides|Rep: DNA uptake protein and related
DNA-binding protein-like protein precursor -
Dehalococcoides sp. BAV1
Length = 166
Score = 42.3 bits (95), Expect = 0.013
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +2
Query: 389 TFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 568
+F+ PP + +++N A L+ LPG+ A +IV +R G FK +L L+ G
Sbjct: 86 SFNPPPLASSAQKIDLNRAEIWLLVALPGIGEARASDIVSYRNQNGGFKNTLELMLIPGF 145
Query: 569 GADKLELLRPEICTHTRKQLS 631
+ ++ IC +S
Sbjct: 146 SQSLYDQIKDMICVSETADIS 166
>UniRef50_Q9N4L5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 745
Score = 42.3 bits (95), Expect = 0.013
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGA 574
+++N A++ L + G+N + A+EIV++R+ GRF+ +L V GIGA
Sbjct: 513 VDLNTASKNLLQRINGLNEKTAKEIVQYREQNGRFRSRAELKEVKGIGA 561
>UniRef50_Q2JI81 Cluster: Phospholipase D/competence protein ComEA
helix-hairpin-helix domain protein; n=2;
Synechococcus|Rep: Phospholipase D/competence protein
ComEA helix-hairpin-helix domain protein - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 591
Score = 41.9 bits (94), Expect = 0.017
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N AT +L LPG+ LA+ I+ R F ++DL V+GIG ++E LR +
Sbjct: 535 VNLNTATAAELEQLPGIGPALAQRIIEARP----FSSLEDLQRVNGIGPARIEQLRDRV 589
>UniRef50_A6FX28 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 482
Score = 41.9 bits (94), Expect = 0.017
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+++++NAA +L LPGV +A I+ RQ F VD LA V GI A +E LR
Sbjct: 354 KVLDLNAACHSELSALPGVGWVIANRILSRRQE-SPFLSVDGLAEVEGISAQTVEALR 410
>UniRef50_A3QFV7 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella loihica PV-4|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Shewanella loihica (strain BAA-1088 / PV-4)
Length = 99
Score = 41.9 bits (94), Expect = 0.017
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN A+ ++L L G+ A IV +R G+F +++L V GIG +E
Sbjct: 39 VNINTASAQELTQLKGIGEAKASAIVEYRDAHGKFNSIEELTQVKGIGPKVIE 91
>UniRef50_Q6AL09 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 110
Score = 41.5 bits (93), Expect = 0.023
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+N+N A + +L+ +PG+ + A I+++R G+F + L V GIG+ L+
Sbjct: 50 VNVNTANKTELIRVPGIGNKTADSILKYRNDHGKFTTITQLTEVKGIGSKSLK 102
>UniRef50_Q2SJI1 Cluster: DNA uptake protein and related DNA-binding
protein; n=1; Hahella chejuensis KCTC 2396|Rep: DNA
uptake protein and related DNA-binding protein - Hahella
chejuensis (strain KCTC 2396)
Length = 101
Score = 41.5 bits (93), Expect = 0.023
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
S E ++NIN A E L L GV + A I+ R G FK + +LALV GIG +
Sbjct: 32 SAEQQNVVNINTADAEALAKALNGVGLKKAEAIIEFRTTNGPFKDISELALVKGIGEKTV 91
Query: 584 E 586
E
Sbjct: 92 E 92
>UniRef50_UPI0000E0E604 Cluster: hypothetical protein OM2255_19632;
n=1; alpha proteobacterium HTCC2255|Rep: hypothetical
protein OM2255_19632 - alpha proteobacterium HTCC2255
Length = 121
Score = 41.1 bits (92), Expect = 0.030
Identities = 18/64 (28%), Positives = 39/64 (60%)
Frame = +2
Query: 431 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEICT 610
++N A+ ++L ++ G+ + A+ IV +R++ G F+ V+ + V G+G L+ L P I
Sbjct: 56 DLNLASTKELASIKGIGIKKAQAIVAYRELHGEFESVEQVTKVKGLGNKLLQKLTPYIIV 115
Query: 611 HTRK 622
+ ++
Sbjct: 116 NPKQ 119
>UniRef50_Q6LIL0 Cluster: Putative uncharacterized protein; n=3;
Vibrionaceae|Rep: Putative uncharacterized protein -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 166
Score = 41.1 bits (92), Expect = 0.030
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +2
Query: 428 MNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+N+N+A+ + L +LPG+ A+ IV +R+ G+FK DLA V G+G
Sbjct: 105 VNVNSASAKDLAASLPGIGDAKAKAIVDYRKKNGKFKSASDLAKVPGLG 153
>UniRef50_Q7VNA6 Cluster: Putative uncharacterized protein; n=1;
Haemophilus ducreyi|Rep: Putative uncharacterized
protein - Haemophilus ducreyi
Length = 119
Score = 40.7 bits (91), Expect = 0.040
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 422 ELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+L+NIN A+ ++ L G+ + A+ IV +R G F +D + VSGIG LE
Sbjct: 55 QLVNINTASAAEIQEKLTGIGEKKAQAIVDYRTKNGNFTHIDQITAVSGIGKATLE 110
>UniRef50_Q6ALW5 Cluster: Similar to DNA transport competence
protein; n=1; Desulfotalea psychrophila|Rep: Similar to
DNA transport competence protein - Desulfotalea
psychrophila
Length = 149
Score = 40.7 bits (91), Expect = 0.040
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 434 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+N AT E L T+PG+ L + IV R G + + L VSGIGA + +
Sbjct: 88 VNMATTELLQTIPGIGPALGQRIVEERGRNGVYDSPESLRRVSGIGASRAQ 138
>UniRef50_Q2SPG5 Cluster: Protein containing HHH motif; n=1; Hahella
chejuensis KCTC 2396|Rep: Protein containing HHH motif -
Hahella chejuensis (strain KCTC 2396)
Length = 129
Score = 40.7 bits (91), Expect = 0.040
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGAD 577
EL+NIN AT +QL +LP + R A++I R F + +DL LV GI D
Sbjct: 71 ELVNINHATVKQLTSLPKIGRATAQKIAEARP----FSKPEDLKLVQGINED 118
>UniRef50_Q44NK3 Cluster: Helix-hairpin-helix motif; n=5;
Chlorobium/Pelodictyon group|Rep: Helix-hairpin-helix
motif - Chlorobium limicola DSM 245
Length = 183
Score = 40.7 bits (91), Expect = 0.040
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 437 NAATEEQLMTLPGVNRQLAREIVRHRQMIG-RFKRVDDLALVSGIGADKLELLRPEI 604
N A+E+QL + GV +A+ +V R G R +R ++L V GIG KLE+L+ +
Sbjct: 124 NKASEKQLQQISGVGPVMAKRLVTFRASKGGRIERHEELLEVKGIGKKKLEILKKHL 180
>UniRef50_Q1N619 Cluster: DNA uptake protein and related DNA-binding
protein; n=1; Oceanobacter sp. RED65|Rep: DNA uptake
protein and related DNA-binding protein - Oceanobacter
sp. RED65
Length = 104
Score = 40.7 bits (91), Expect = 0.040
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGA 574
E ++IN A+ EQL L + A+ I+ +R+ G FK ++DL V GIG+
Sbjct: 40 ETIDINTASAEQLTQLDNIGPNKAQAIIDYRESNGPFKDLEDLQNVKGIGS 90
>UniRef50_Q0A9Z1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Alkalilimnicola ehrlichei MLHE-1|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Alkalilimnicola ehrlichei (strain MLHE-1)
Length = 90
Score = 40.7 bits (91), Expect = 0.040
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 428 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++IN A L L GV A+ IV HR+ G F VDDL VSGIG LE R I
Sbjct: 28 IDINTADAGLLAEELVGVGESRAQAIVEHREANGPFGSVDDLTQVSGIGETTLEENRERI 87
>UniRef50_A4AGG3 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; marine actinobacterium
PHSC20C1|Rep: Competence protein ComEA
helix-hairpin-helix region - marine actinobacterium
PHSC20C1
Length = 196
Score = 40.7 bits (91), Expect = 0.040
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+N+N A L TLP + +A+ I+ R+ G F +DDL V+GIG E LR
Sbjct: 136 VNLNTADAAALDTLPRIGPAMAKRILAWRESNGPFVTIDDLRNVAGIGDATFEGLR 191
>UniRef50_A3YGE0 Cluster: Putative uncharacterized protein; n=1;
Marinomonas sp. MED121|Rep: Putative uncharacterized
protein - Marinomonas sp. MED121
Length = 121
Score = 40.7 bits (91), Expect = 0.040
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 428 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+++N AT EQL + GV ++ A+ I+ +R+ G F +D+L V GIG L+
Sbjct: 44 LDVNLATAEQLAAVMVGVGQKKAQAIIEYRETNGAFNALDELIFVKGIGPSLLK 97
>UniRef50_A1WUI2 Cluster: Transcriptional regulator, Fis family
precursor; n=1; Halorhodospira halophila SL1|Rep:
Transcriptional regulator, Fis family precursor -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 99
Score = 40.7 bits (91), Expect = 0.040
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 428 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++INAA+ ++L + L GV A I+ R+ G F+ +DL+ VSG+G LE R +I
Sbjct: 34 VDINAASADELASVLNGVGEARAEAIIEEREANGPFQDAEDLSRVSGVGPATLEENREQI 93
>UniRef50_A1R6X3 Cluster: Putative comEA protein; n=1; Arthrobacter
aurescens TC1|Rep: Putative comEA protein - Arthrobacter
aurescens (strain TC1)
Length = 276
Score = 40.7 bits (91), Expect = 0.040
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+NIN A+ E+L TLP V A+ I+ R+ G F V++L V GIG +E L+
Sbjct: 213 VNINTASLEELGTLPRVGPVTAQGIIDWRKEHGPFASVEELDAVDGIGPKLMESLK 268
>UniRef50_A6GK03 Cluster: Competence protein ComEA-related protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Competence protein
ComEA-related protein - Plesiocystis pacifica SIR-1
Length = 158
Score = 40.3 bits (90), Expect = 0.053
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2
Query: 410 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLEL 589
E + +++N A+ E+L +LPGV LA IV R ++ VD L V GIG +L
Sbjct: 85 ERLAQPVDLNTASVEELASLPGVGPALAARIVAGRP----YRSVDALIEVHGIGPARLAK 140
Query: 590 LRP 598
LRP
Sbjct: 141 LRP 143
>UniRef50_A3U4E0 Cluster: Putative uncharacterized protein; n=1;
Croceibacter atlanticus HTCC2559|Rep: Putative
uncharacterized protein - Croceibacter atlanticus
HTCC2559
Length = 266
Score = 40.3 bits (90), Expect = 0.053
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+NIN A L LP +N ++AR+I+++R++ G F ++ L ++ +K + ++
Sbjct: 206 ININTAKITDLSELPNLNYEIARQIIKYRELNGEFNDINQLKSIAEFPIEKFDRIQ 261
>UniRef50_A3M289 Cluster: Putative DNA uptake protein; n=1;
Acinetobacter baumannii ATCC 17978|Rep: Putative DNA
uptake protein - Acinetobacter baumannii (strain ATCC
17978 / NCDC KC 755)
Length = 120
Score = 40.3 bits (90), Expect = 0.053
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 362 KLNKSSLSHTFSLPPSE-----EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIG 526
KLN S SH+ S+ + +++N A + L G+ + A+ IV +RQ G
Sbjct: 33 KLNISKFSHSNGSKISQTKNFNDSTGQIHLNQANVNEFQQLKGIGEKKAQAIVEYRQKNG 92
Query: 527 RFKRVDDLALVSGIG 571
FK +D++ V GIG
Sbjct: 93 SFKNIDEIKNVKGIG 107
>UniRef50_A2TTL6 Cluster: Putative uncharacterized protein; n=1;
Dokdonia donghaensis MED134|Rep: Putative
uncharacterized protein - Dokdonia donghaensis MED134
Length = 294
Score = 40.3 bits (90), Expect = 0.053
Identities = 31/115 (26%), Positives = 54/115 (46%)
Frame = +2
Query: 434 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEICTH 613
+N+ T E L+ + GV+ A I+RHR +G ++ D + S G DK ++ + H
Sbjct: 166 LNSLTYEDLLAIEGVDENAATAIIRHRDKVGGYQ--VDFQIYSVYGVDK--SVKRLVLNH 221
Query: 614 TRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVXYR 778
+++ E R ++N+++ L VP LN ++A IV YR
Sbjct: 222 Y---------------TVKNRPEIRFVNVNTATASDLSTVPLLNFDLAKEIVDYR 261
Score = 35.1 bits (77), Expect = 2.0
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 419 PEL--MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 592
PE+ +N+N AT L T+P +N LA+EIV +R + +++L + G+ K +++
Sbjct: 228 PEIRFVNVNTATASDLSTVPLLNFDLAKEIVDYRTLREGISSLEELKDLEGMTDFKYDII 287
>UniRef50_Q00XW9 Cluster: Transcriptional accessory protein; n=2;
Ostreococcus|Rep: Transcriptional accessory protein -
Ostreococcus tauri
Length = 948
Score = 40.3 bits (90), Expect = 0.053
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +2
Query: 431 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
N N A+E L +PG+ LA +IVRHR G F +L V G+G+ E
Sbjct: 699 NANTASESLLARIPGLGPSLAAKIVRHRTDNGPFAARAELQRVGGVGSKTYE 750
>UniRef50_UPI000050F794 Cluster: COG1555: DNA uptake protein and
related DNA-binding proteins; n=1; Brevibacterium linens
BL2|Rep: COG1555: DNA uptake protein and related
DNA-binding proteins - Brevibacterium linens BL2
Length = 302
Score = 39.9 bits (89), Expect = 0.070
Identities = 24/56 (42%), Positives = 30/56 (53%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+N+N A L TLPGV A I+ +R+ F VDDL LV GIG E L+
Sbjct: 242 VNLNTADLTTLETLPGVGPVTAEAIIAYREE-QPFATVDDLLLVPGIGPKTFESLK 296
>UniRef50_Q12LC2 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Shewanella
denitrificans OS217|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Length = 137
Score = 39.9 bits (89), Expect = 0.070
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+NIN A ++L L G+ A+ I+ +R+ G+ +D+L VSGIG +E
Sbjct: 77 VNINRADLDELQQLKGIGLAKAKAIIEYREHNGKIDSLDELTQVSGIGEKFIE 129
>UniRef50_A1ARE9 Cluster: Putative uncharacterized protein; n=1;
Pelobacter propionicus DSM 2379|Rep: Putative
uncharacterized protein - Pelobacter propionicus (strain
DSM 2379)
Length = 222
Score = 39.9 bits (89), Expect = 0.070
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
++INA LPG+ LA IV RQ G R D L V GIG K ++L+
Sbjct: 163 LDINAMDGADFDRLPGIGPVLAARIVEFRQFNGGKMRPDQLIFVKGIGLKKYDILK 218
>UniRef50_A0W5M0 Cluster: ComEA-related protein precursor; n=1;
Geobacter lovleyi SZ|Rep: ComEA-related protein
precursor - Geobacter lovleyi SZ
Length = 198
Score = 39.9 bits (89), Expect = 0.070
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+++N ++ LPG+ LA IV RQ G DDL V GIG KL+ L P
Sbjct: 134 LDLNTMSQADFELLPGIGPALAYRIVGFRQKNGDTLAFDDLLQVDGIGEKKLKQLYP 190
>UniRef50_A7HGA6 Cluster: Helix-hairpin-helix motif precursor; n=2;
Anaeromyxobacter|Rep: Helix-hairpin-helix motif
precursor - Anaeromyxobacter sp. Fw109-5
Length = 109
Score = 39.5 bits (88), Expect = 0.093
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
E +++N A+ +LM LPG+ + A+ IV HR F+R +D+ V GIG
Sbjct: 31 ERIDLNRASVGELMRLPGIGEKRAQAIVAHRTR-QAFRRPEDVLAVKGIG 79
>UniRef50_A7FQJ6 Cluster: RNA-binding protein; n=4; Clostridium
botulinum|Rep: RNA-binding protein - Clostridium
botulinum (strain ATCC 19397 / Type A)
Length = 718
Score = 39.5 bits (88), Expect = 0.093
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+++N AT L + G+N +A+ IV +R+ IG+FK +L V +G E
Sbjct: 487 VDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFE 539
>UniRef50_A4W7B3 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=2;
Enterobacteriaceae|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Enterobacter sp. 638
Length = 129
Score = 39.5 bits (88), Expect = 0.093
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 395 SLPPSEEYPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
S ++E ++IN+A+ E L + GV + A+ I+ +R G FK +DDL V GIG
Sbjct: 57 SAKATDEEGTQVSINSASAEDLAHAMNGVGLKKAQAIIAYRDEYGPFKTIDDLKQVPGIG 116
Query: 572 ADKLE 586
+E
Sbjct: 117 NSLVE 121
>UniRef50_A4M6C4 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Petrotoga
mobilis SJ95|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Petrotoga mobilis
SJ95
Length = 171
Score = 39.5 bits (88), Expect = 0.093
Identities = 31/117 (26%), Positives = 58/117 (49%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 607
+++ A+ E+L+ LPG+ A+ I+ +RQ G F+ ++D+ VSGIG
Sbjct: 42 IDLLTASVEELIRLPGIGPAKAQAIINYRQEKG-FREIEDIMNVSGIG------------ 88
Query: 608 THTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVXYR 778
K S + + I + ++ +IN +S +L+ +PG+ + A I+ YR
Sbjct: 89 ---EKTFSNIKDYIYLSEVIYEIVDEKI-NINEASSEELESLPGIGKVSAQKIIEYR 141
Score = 36.7 bits (81), Expect = 0.65
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
E +NIN A+ E+L +LPG+ + A++I+ +R I +DDL + GI + +E + +
Sbjct: 111 EKININEASSEELESLPGIGKVSAQKIIEYR-AIKPISSLDDLKKL-GIPSSTIEKIEGK 168
Query: 602 I 604
I
Sbjct: 169 I 169
>UniRef50_Q17DF5 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 389
Score = 39.5 bits (88), Expect = 0.093
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +2
Query: 434 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA 553
+N + +++ LP V ++A +IV HR + G+FK++DDLA
Sbjct: 331 VNRGSIKEVQILPTVGLKMAYQIVTHRTINGKFKKIDDLA 370
>UniRef50_Q57134 Cluster: Uncharacterized protein HI1008 precursor;
n=14; Pasteurellaceae|Rep: Uncharacterized protein
HI1008 precursor - Haemophilus influenzae
Length = 112
Score = 39.5 bits (88), Expect = 0.093
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 428 MNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN AT ++ +L G+ + A IV++R+ G F + L V GIG LE R I
Sbjct: 51 LNINTATASEIQKSLTGIGAKKAEAIVQYREKHGNFXNAEQLLEVQGIGKATLEKNRDRI 110
>UniRef50_Q8KB66 Cluster: ComEA-related protein; n=1; Chlorobaculum
tepidum|Rep: ComEA-related protein - Chlorobium tepidum
Length = 171
Score = 39.1 bits (87), Expect = 0.12
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 443 ATEEQLMTLPGVNRQLAREIVRHR-QMIGRFKRVDDLALVSGIGADKLELLRPEI 604
A+ QL +PGV +A+ ++ R Q G+ + +D V GIG KLELL+ +
Sbjct: 114 ASASQLQMIPGVGPMMAKRLIEFRKQNGGKVEHFNDFLKVKGIGKKKLELLQKHL 168
>UniRef50_A5FIK8 Cluster: Putative uncharacterized protein; n=3;
Flavobacteriales|Rep: Putative uncharacterized protein -
Flavobacterium johnsoniae UW101
Length = 295
Score = 39.1 bits (87), Expect = 0.12
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +2
Query: 434 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 592
IN A+ ++L P LA++IV +R M G F ++DL+ + G +K +++
Sbjct: 237 INDASLKELSQFPYFKYALAKQIVTYRSMNGNFNNIEDLSKIKGFPVEKAKII 289
>UniRef50_A1SHW1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Nocardioides
sp. JS614|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Nocardioides sp.
(strain BAA-499 / JS614)
Length = 300
Score = 39.1 bits (87), Expect = 0.12
Identities = 23/58 (39%), Positives = 31/58 (53%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
L+++N AT+ +L LP V A+ I+ R G F VD+L V GIG L L P
Sbjct: 239 LVDLNTATQAELEALPEVGPVTAQAILAWRDEHGGFTSVDELLEVDGIGDATLGQLAP 296
>UniRef50_Q2NGF6 Cluster: Putative uncharacterized protein; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Putative
uncharacterized protein - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 310
Score = 39.1 bits (87), Expect = 0.12
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +2
Query: 368 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 547
N+ T S+P +E + L+NIN A +L LPG+N LA+++++ RQ ++D
Sbjct: 220 NRKETQPTKSIP-TESF-SLVNINTAGVNELSKLPGINMILAKKLIQLRQDGYIVTSLND 277
Query: 548 LALVSGIGADKLELLRPEICTHTRKQLSR 634
L + +LE L P I + SR
Sbjct: 278 LGQKLNLKEFELEQLEPYITIEQDTRKSR 306
>UniRef50_Q080A1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella frigidimarina NCIMB 400|Rep: Competence
protein ComEA helix-hairpin-helix repeat protein
precursor - Shewanella frigidimarina (strain NCIMB 400)
Length = 112
Score = 38.7 bits (86), Expect = 0.16
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 389 TFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 568
T S+ + +NIN A+ +L L G+ + A+ IV +R G+F + L +V+GI
Sbjct: 39 TKSIEKKSTAMQKVNINKASAVELQALKGIGQAKAKAIVDYRTKNGKFTDLKQLTMVTGI 98
Query: 569 G 571
G
Sbjct: 99 G 99
>UniRef50_P0AAR9 Cluster: Uncharacterized protein ybaV precursor;
n=18; Enterobacteriaceae|Rep: Uncharacterized protein
ybaV precursor - Shigella flexneri
Length = 123
Score = 38.7 bits (86), Expect = 0.16
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 437 NAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
NA+ EE + GV + A+ IV +R+ G FK V+DL V G+G +E
Sbjct: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115
>UniRef50_Q892P4 Cluster: Come operon protein 1; n=6;
Clostridium|Rep: Come operon protein 1 - Clostridium
tetani
Length = 188
Score = 38.3 bits (85), Expect = 0.21
Identities = 15/59 (25%), Positives = 35/59 (59%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A++E+L ++PG+ A +IV +R+ F ++++ + IG E ++ ++
Sbjct: 127 INLNKASKEELKSIPGIGDVTAEKIVNYRKENNGFNSIEEIKNIDRIGEKTFEKIKDKL 185
>UniRef50_Q7MU66 Cluster: Conserved domain protein; n=1;
Porphyromonas gingivalis|Rep: Conserved domain protein -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 234
Score = 38.3 bits (85), Expect = 0.21
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 407 SEEYPE--LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
++++P ++++NAA L +PG+ AR IV +R+ +G + V L V G+ ++
Sbjct: 97 ADKFPRGTVIDLNAADSATLTRIPGIGPTFARRIVSYRRQLGGYYTVLQLQEVYGMDYER 156
Query: 581 LELLRP 598
LRP
Sbjct: 157 FCALRP 162
>UniRef50_Q0YI81 Cluster: Helix-hairpin-helix motif; n=1; Geobacter
sp. FRC-32|Rep: Helix-hairpin-helix motif - Geobacter
sp. FRC-32
Length = 189
Score = 38.3 bits (85), Expect = 0.21
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
+++ E+ LPG+ A++IV +RQ G F +++L V GI K+E +R
Sbjct: 128 LDLGLMEEDDWEALPGIGPTTAKDIVNYRQDNGGFCSIEELKSVKGISEGKVEKIR 183
>UniRef50_A6Q6F8 Cluster: DNA uptake protein; n=1; Sulfurovum sp.
NBC37-1|Rep: DNA uptake protein - Sulfurovum sp. (strain
NBC37-1)
Length = 111
Score = 38.3 bits (85), Expect = 0.21
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
L +N A++ +LM + G+ + A I++ R+ G+FK +D V GIG + +R ++
Sbjct: 22 LNQLNTASKSELMQIKGIGEKKADAIIKERKK-GKFKSFEDFQRVEGIGEQTAKNVRNDV 80
>UniRef50_A4VJE7 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas stutzeri A1501|Rep: Putative uncharacterized
protein - Pseudomonas stutzeri (strain A1501)
Length = 105
Score = 38.3 bits (85), Expect = 0.21
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 425 LMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
++N+N A + L L G+ AR IV +R+ G F +D+L V GIG LE R +
Sbjct: 42 VVNLNTADAQTLTRELKGIGASKARAIVAYREEHGPFSSLDELLEVKGIGVSTLEQNRGK 101
Query: 602 I 604
+
Sbjct: 102 L 102
>UniRef50_Q026M9 Cluster: DNA uptake protein and related DNA-binding
protein-like protein precursor; n=1; Solibacter usitatus
Ellin6076|Rep: DNA uptake protein and related
DNA-binding protein-like protein precursor - Solibacter
usitatus (strain Ellin6076)
Length = 148
Score = 37.9 bits (84), Expect = 0.28
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 431 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
N+N+A E L G ++ A IV +RQ G FK +DDL V + A +++
Sbjct: 85 NVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKSLDDLKKVPSLDAAEVD 136
>UniRef50_Q01NQ1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Solibacter usitatus Ellin6076|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Solibacter usitatus (strain Ellin6076)
Length = 153
Score = 37.9 bits (84), Expect = 0.28
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +2
Query: 404 PSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
P++E P++ N+N A +L + + R A I+++R G F ++DL V G+ A K+
Sbjct: 85 PADEIPKI-NVNEARAVELESGLSLPRSQAAAIIQYRTKNGDFHSIEDLKKVPGVDAAKI 143
Query: 584 E 586
E
Sbjct: 144 E 144
>UniRef50_A5I0J3 Cluster: Putative membrane protein; n=4;
Clostridium botulinum|Rep: Putative membrane protein -
Clostridium botulinum A str. ATCC 3502
Length = 272
Score = 37.9 bits (84), Expect = 0.28
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
EL++IN+ E +L LPG+ LA++ V R F VD+ + G+ ++ ++
Sbjct: 192 ELLDINSCNELELSRLPGMGLILAKKAVNLRNSKNGFDSVDEFIEMVGVKPHFVDTVKSM 251
Query: 602 ICTHTRKQLSRASSCAHSLD 661
IC + K + +D
Sbjct: 252 ICCNPVKTVETVKMSGRRVD 271
>UniRef50_A4M6H3 Cluster: RNA binding S1 domain protein; n=1;
Petrotoga mobilis SJ95|Rep: RNA binding S1 domain
protein - Petrotoga mobilis SJ95
Length = 720
Score = 37.9 bits (84), Expect = 0.28
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+N+N A+ L + G+ LA++IV++RQ G F + DL V G G E
Sbjct: 480 VNLNTASYSLLEYVSGITSSLAKKIVQYRQKNGSFNKRADLLNVKGFGEKAFE 532
>UniRef50_A0IWY1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Serratia proteamaculans 568|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Serratia proteamaculans 568
Length = 129
Score = 37.9 bits (84), Expect = 0.28
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 428 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
++IN A EQL + L GV + A IVR+R+ G F +++ L V GIG E R +
Sbjct: 68 VSINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARL 127
>UniRef50_Q9CKF6 Cluster: Putative uncharacterized protein PM1665;
n=1; Pasteurella multocida|Rep: Putative uncharacterized
protein PM1665 - Pasteurella multocida
Length = 115
Score = 37.5 bits (83), Expect = 0.37
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 404 PSEEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
P + E +NIN A+ L L G+ + A I++HR+ G F ++ L + GIG
Sbjct: 46 PQDTLNEKVNINTASATDLQQKLLGIGAKKAEAIIQHREKHGPFTDIEQLRDIQGIGQAI 105
Query: 581 LE 586
LE
Sbjct: 106 LE 107
>UniRef50_Q4ZQA5 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=5;
Pseudomonas|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Pseudomonas
syringae pv. syringae (strain B728a)
Length = 120
Score = 37.5 bits (83), Expect = 0.37
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 410 EEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
E+ + +N+N A + L L G+ + A IV +R+ G F +D+L V GIG LE
Sbjct: 52 EQRKDRVNLNTADAQTLQKELAGIGKNKADAIVAYREANGDFTSIDELIEVKGIGKAILE 111
Query: 587 LLRPEI 604
R ++
Sbjct: 112 RNREKL 117
>UniRef50_Q2S2C5 Cluster: Putative uncharacterized protein; n=1;
Salinibacter ruber DSM 13855|Rep: Putative
uncharacterized protein - Salinibacter ruber (strain DSM
13855)
Length = 726
Score = 37.1 bits (82), Expect = 0.50
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 434 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+N A+ L LP + + A IV++R G F V+DL V GIG ++ +RP
Sbjct: 104 LNRASVADLSMLPRLTSRDAHRIVQYRTDNGPFTAVEDLRAVDGIGPAAVQSVRP 158
>UniRef50_Q21IS7 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Saccharophagus
degradans 2-40|Rep: Competence protein ComEA
helix-hairpin-helix region - Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024)
Length = 119
Score = 37.1 bits (82), Expect = 0.50
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+++ +NIN A E + T L GV + A IV +R G F ++ LA V GIG
Sbjct: 51 TQQVVNTVNINKADAEAIATALVGVGKAKAEAIVAYRTQHGEFTSIEQLAEVKGIG 106
>UniRef50_A1FWY0 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Stenotrophomonas maltophilia R551-3|Rep: Competence
protein ComEA helix-hairpin-helix repeat protein
precursor - Stenotrophomonas maltophilia R551-3
Length = 103
Score = 37.1 bits (82), Expect = 0.50
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 ELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
E ++IN A + L L V A IV HR+ G F RV+DL V GIG +E R
Sbjct: 18 EPIDINRADAQALQQGLTMVGAAKAEAIVEHRRRHGPFHRVEDLTQVKGIGKAIVERNRQ 77
Query: 599 EICTHTR 619
I R
Sbjct: 78 RITVGNR 84
>UniRef50_Q8FGH2 Cluster: Putative uncharacterized protein; n=2;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli O6
Length = 393
Score = 36.7 bits (81), Expect = 0.65
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 431 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
+IN AT ++L L +NR +A+EIV+ R G+ +D L + GIGA L
Sbjct: 335 DINKATLDELEALLNINRTIAKEIVKARVREGKLD-LDILKNIKGIGAKTL 384
>UniRef50_Q67K87 Cluster: Ribosomal protein S1-like RNA-binding
domain; n=42; cellular organisms|Rep: Ribosomal protein
S1-like RNA-binding domain - Symbiobacterium
thermophilum
Length = 764
Score = 36.7 bits (81), Expect = 0.65
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+++N A+ L + G+ +AR IV +R+ G+F+ +L VSG+G E
Sbjct: 490 VDLNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGLGPKAFE 542
>UniRef50_Q47FY2 Cluster: Putative uncharacterized protein; n=1;
Dechloromonas aromatica RCB|Rep: Putative
uncharacterized protein - Dechloromonas aromatica
(strain RCB)
Length = 370
Score = 36.7 bits (81), Expect = 0.65
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +2
Query: 401 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 580
P + + ++IN A+E++L + G+ R++AR I+ R + +DD+ G+G K
Sbjct: 305 PAKKAAAKPVSINKASEDELAAIKGLPREVARAIIAARP----YASLDDVCKAKGMGLKK 360
Query: 581 LELLR 595
L LR
Sbjct: 361 LAKLR 365
>UniRef50_A6LZZ5 Cluster: Putative uncharacterized protein; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: Putative
uncharacterized protein - Clostridium beijerinckii NCIMB
8052
Length = 301
Score = 36.7 bits (81), Expect = 0.65
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 422 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
+L++ N+ TE++L+ LPGV A++ + R F VD+ V I E +R
Sbjct: 215 KLLDANSCTEDELLQLPGVGIIEAKKAINFRNN-NEFNSVDEFIQVLNIKPHFTEKIRSM 273
Query: 602 -ICTHTRKQLSRASS 643
IC T+K S +S
Sbjct: 274 LICNQTKKNESTNNS 288
>UniRef50_Q8YSV5 Cluster: All2976 protein; n=3; Nostocaceae|Rep:
All2976 protein - Anabaena sp. (strain PCC 7120)
Length = 177
Score = 36.3 bits (80), Expect = 0.86
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
++ N AT + + LPG++ AR +V + +F ++D+A G+ A +LE L+P
Sbjct: 42 IDTNQATVDDWLRLPGLSIHQARSLVELSRSGVKFYCIEDIAAALGLPAQRLEPLKP 98
>UniRef50_Q6LNW5 Cluster: Putative DNA uptake protein; n=4;
Vibrionaceae|Rep: Putative DNA uptake protein -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 94
Score = 35.9 bits (79), Expect = 1.1
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 428 MNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN A E+L L G+ + A I+ +R+ G F+ DDL V GIG ++ R I
Sbjct: 33 ININNANAEELDKLLIGIGPEKAESIIIYRKEKGDFQTADDLINVKGIGLATVDKNRERI 92
>UniRef50_A5IZ64 Cluster: Putative uncharacterized protein; n=1;
Mycoplasma agalactiae|Rep: Putative uncharacterized
protein - Mycoplasma agalactiae
Length = 720
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+++N A+ E L + G+N + + I+ +R IG+F+ ++L V +G + E
Sbjct: 490 VDLNTASAEILKFVSGLNNKHVQNIIEYRSKIGKFRNREELLKVKSLGENTYE 542
>UniRef50_Q9RTB0 Cluster: Competence protein ComEA-related protein;
n=1; Deinococcus radiodurans|Rep: Competence protein
ComEA-related protein - Deinococcus radiodurans
Length = 126
Score = 35.5 bits (78), Expect = 1.5
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 598
+N+N A++EQL LP V +A++I+ R + + DL V G+G L L P
Sbjct: 70 VNLNTASQEQLEALPKVGPAMAKKIIAGRP----YHSLADLDRVKGVGEATLRTLTP 122
>UniRef50_Q8EN07 Cluster: Late competence protein; n=1;
Oceanobacillus iheyensis|Rep: Late competence protein -
Oceanobacillus iheyensis
Length = 359
Score = 35.5 bits (78), Expect = 1.5
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 386 HTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSG 565
HT E +NIN +TEEQL + + A +IV R F+ + DL + G
Sbjct: 285 HTEHPHDDSEQTACVNINESTEEQLQEIVHIGASRAEQIVEERP----FESLQDLDSIQG 340
Query: 566 IGADKL 583
IG ++
Sbjct: 341 IGMSRI 346
>UniRef50_Q30TR1 Cluster: Putative uncharacterized protein; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: Putative
uncharacterized protein - Thiomicrospira denitrificans
(strain ATCC 33889 / DSM 1351)
Length = 83
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
++IN A + QLM + GV A I+ +R+ FK V+++ V G G LE
Sbjct: 18 VDINKADKAQLMEIKGVGEAKANAILEYRKEHKCFKTVEEIKNVKGFGVKFLE 70
>UniRef50_A6G1S3 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 793
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+ +N A+ L + GV LA++IV HR+ +G F L+ V G+G E
Sbjct: 498 VELNTASASLLSYVAGVGGSLAKKIVAHRERVGPFPNRAALSEVPGLGPKTFE 550
>UniRef50_A4BGP1 Cluster: Putative uncharacterized protein; n=1;
Reinekea sp. MED297|Rep: Putative uncharacterized
protein - Reinekea sp. MED297
Length = 104
Score = 35.5 bits (78), Expect = 1.5
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 428 MNINAATEEQLMTLP-GVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
++IN E+L L GV + A IV +R+ G F V+DL +V GIG LE
Sbjct: 39 VDINGDDAEKLADLMNGVGLKKAEAIVSYREENGAFTAVEDLLMVPGIGPATLE 92
>UniRef50_Q8RH48 Cluster: Transcription accessory protein; n=9;
Bacteria|Rep: Transcription accessory protein -
Fusobacterium nucleatum subsp. nucleatum
Length = 723
Score = 35.1 bits (77), Expect = 2.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 431 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
NIN A+ L + G+ + +A+ IV +R+ G FK + V G+G E
Sbjct: 492 NINTASWALLSHISGIKKTVAKNIVNYRKENGNFKNRKQILKVKGVGPKAYE 543
>UniRef50_A6G3N0 Cluster: Competence protein comEA; n=1;
Plesiocystis pacifica SIR-1|Rep: Competence protein
comEA - Plesiocystis pacifica SIR-1
Length = 138
Score = 35.1 bits (77), Expect = 2.0
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+NIN A+ +L LPGV +A+ IV +R FK+++ L V G+G ++P I
Sbjct: 69 ININEASAAELELLPGVGPAIAQRIVDYR-ADRPFKQLNHLMRVKGVGKKTYLKVKPYI 126
>UniRef50_A4AT81 Cluster: Putative uncharacterized protein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
uncharacterized protein - Flavobacteriales bacterium
HTCC2170
Length = 296
Score = 34.7 bits (76), Expect = 2.6
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
SE ++IN A+ +++ L + +LA +IV +RQ+ G F ++L + G DK+
Sbjct: 229 SEPSISKIDINTASAQEISKLIYLRYELASKIVEYRQVNGVFASFEELNNIEGFPTDKIN 288
Query: 587 LLR 595
++
Sbjct: 289 RIQ 291
>UniRef50_A7SH52 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 365
Score = 34.7 bits (76), Expect = 2.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 380 LSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALV 559
L T +L ++ L +N + EQL + + A +++HR G + DL+ V
Sbjct: 30 LGRTLNLTEKQQQSILTELNTRSLEQLKATKYIGKNKAEALIQHRDQHGLLSSLQDLSGV 89
Query: 560 SGIGA---DKLE 586
G G D+LE
Sbjct: 90 RGFGKAFYDRLE 101
>UniRef50_Q1INK1 Cluster: Putative uncharacterized protein; n=1;
Acidobacteria bacterium Ellin345|Rep: Putative
uncharacterized protein - Acidobacteria bacterium
(strain Ellin345)
Length = 129
Score = 34.3 bits (75), Expect = 3.5
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 601
+++N + E L+TLPG+ A IV +R R V + + SG+ + +L+ E
Sbjct: 60 VDLNLCSHEDLVTLPGITEHFAERIVENRPYRHRLDLVARMVIPSGVYQEIRDLIDVE 117
>UniRef50_Q12AI9 Cluster: RNA binding S1; n=3; Comamonadaceae|Rep:
RNA binding S1 - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 803
Score = 34.3 bits (75), Expect = 3.5
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+++N A+ L + G+++ +A+ +VR R G F DL V+G+GA E
Sbjct: 518 VDLNTASVPLLARVSGLSQTVAKSVVRWRDANGAFASRADLLKVTGLGAKTFE 570
>UniRef50_A6VTC2 Cluster: RNA binding S1 domain protein; n=2;
Marinomonas|Rep: RNA binding S1 domain protein -
Marinomonas sp. MWYL1
Length = 720
Score = 34.3 bits (75), Expect = 3.5
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
++IN A+ L + G+ +LA+ IV +RQ GR + +L + GIG
Sbjct: 494 VDINLASVSLLSYVSGLTNRLAQNIVDYRQQKGRIESRSELLKIKGIG 541
>UniRef50_A6LJP5 Cluster: RNA binding S1 domain protein; n=1;
Thermosipho melanesiensis BI429|Rep: RNA binding S1
domain protein - Thermosipho melanesiensis BI429
Length = 662
Score = 34.3 bits (75), Expect = 3.5
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+++N+A+ + L + G+ LA++IV R+ IG+F L + G+G
Sbjct: 461 IDLNSASSKLLEHVAGITPSLAKKIVNFRKKIGKFTERKQLLEIEGLG 508
>UniRef50_A4SW63 Cluster: Helix-hairpin-helix motif precursor; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep:
Helix-hairpin-helix motif precursor - Polynucleobacter
sp. QLW-P1DMWA-1
Length = 142
Score = 34.3 bits (75), Expect = 3.5
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDL-ALVSGIGADKLE 586
+N+N AT+ +L ++ G+ A+ I+ R G F+ +DL V GIG +E
Sbjct: 36 INVNTATQTELESIKGIGPSKAKTIIAERLDGGHFQDANDLQKRVRGIGMKSVE 89
>UniRef50_Q31PX0 Cluster: Putative uncharacterized protein; n=2;
Synechococcus elongatus|Rep: Putative uncharacterized
protein - Synechococcus sp. (strain PCC 7942) (Anacystis
nidulans R2)
Length = 196
Score = 33.9 bits (74), Expect = 4.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 452 EQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 547
E L TLPGVN +AREI+ R + G ++ + D
Sbjct: 144 EILETLPGVNEAIAREIIHQRLLRGPYRDIAD 175
>UniRef50_Q13DT2 Cluster: Putative uncharacterized protein; n=4;
Rhodopseudomonas palustris|Rep: Putative uncharacterized
protein - Rhodopseudomonas palustris (strain BisB5)
Length = 130
Score = 33.9 bits (74), Expect = 4.6
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 413 EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGR 529
E +L++IN+AT EQL LPG+ + + I++ R G+
Sbjct: 65 EKVDLLDINSATVEQLEVLPGIGKAYSAAIIKGRPYKGK 103
>UniRef50_P96626 Cluster: YdcI protein; n=1; Bacillus subtilis|Rep:
YdcI protein - Bacillus subtilis
Length = 670
Score = 33.9 bits (74), Expect = 4.6
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+N+N A+ L + G+++ +A +V+ R+ IG+F +L + +GA E
Sbjct: 549 VNVNTASAALLQYVAGLSKSVAGNVVKKREEIGKFSNRKELKDIPRLGAKTYE 601
>UniRef50_A6Q872 Cluster: Transcription accessory protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Transcription accessory
protein - Sulfurovum sp. (strain NBC37-1)
Length = 698
Score = 33.9 bits (74), Expect = 4.6
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 586
+++N+A+ L + G+ ++A IV+HR+ G F + V G+GA E
Sbjct: 484 VDVNSASASLLSYVAGLGMKVAENIVKHRESEGTFDSKKAVLKVKGLGAKAYE 536
>UniRef50_A6LGB3 Cluster: Putative uncharacterized protein; n=2;
Parabacteroides|Rep: Putative uncharacterized protein -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 686
Score = 33.9 bits (74), Expect = 4.6
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 413 EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 592
E+P ++NA TEEQL LP ++ + +++ +R+ G + +L + I + LL
Sbjct: 59 EHP--FDLNAVTEEQLKRLPFLSDRQIEQLLSYRKRYGNMVSIYELKNIEDIDFQTISLL 116
Query: 593 RP 598
P
Sbjct: 117 LP 118
>UniRef50_Q3A5U8 Cluster: Putative uncharacterized protein; n=1;
Pelobacter carbinolicus DSM 2380|Rep: Putative
uncharacterized protein - Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1)
Length = 184
Score = 33.5 bits (73), Expect = 6.1
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 467 LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
LPG+ +LA IV+ RQ G F + + VSGIG ++ LR
Sbjct: 139 LPGIGPRLAARIVQDRQKNGDFGEIMAVQRVSGIGPATVKRLR 181
>UniRef50_Q022M3 Cluster: Putative uncharacterized protein
precursor; n=1; Solibacter usitatus Ellin6076|Rep:
Putative uncharacterized protein precursor - Solibacter
usitatus (strain Ellin6076)
Length = 158
Score = 33.5 bits (73), Expect = 6.1
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 413 EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
+Y +++NAAT +L ++ + AR IV R+ G+FK +++ V G+ A K+
Sbjct: 92 KYLGKVSVNAATAAELQEGLKISDKDARLIVEWREQHGKFKNFEEVRKVPGLDAAKI 148
>UniRef50_A6C5P8 Cluster: Ribosomal protein S1-like RNA-binding
domain; n=1; Planctomyces maris DSM 8797|Rep: Ribosomal
protein S1-like RNA-binding domain - Planctomyces maris
DSM 8797
Length = 828
Score = 33.5 bits (73), Expect = 6.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 571
+N+N A+ L + G+N+ +AR I R+ G F+ L V+G+G
Sbjct: 502 VNLNTASASLLRHVSGMNQLIARRITEWREKHGSFQNRKQLLDVAGVG 549
>UniRef50_A5NV11 Cluster: RNA binding S1 domain protein; n=3;
Bacteria|Rep: RNA binding S1 domain protein -
Methylobacterium sp. 4-46
Length = 1051
Score = 33.5 bits (73), Expect = 6.1
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +2
Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLEL 589
+++N A+ L + G++ ++A+ IV HR G F+ L V+G+G EL
Sbjct: 771 VDVNTASAPLLARVSGLSERVAQAIVVHRDAHGPFRSRTALKKVAGLGPKAFEL 824
>UniRef50_A4SD07 Cluster: Helix-hairpin-helix DNA-binding, class 1;
n=2; Chlorobium/Pelodictyon group|Rep:
Helix-hairpin-helix DNA-binding, class 1 -
Prosthecochloris vibrioformis DSM 265
Length = 177
Score = 33.5 bits (73), Expect = 6.1
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 437 NAATEEQLMTLPGVNRQLAREIVRHR-QMIGRFKRVDDLALVSGIGADKLELLR 595
N A E+L + G+ +A ++ R + GR ++L V G+G KLE+L+
Sbjct: 118 NRAGSEELQQIKGIGPVMAERLIAFRTENGGRITTFNELLKVKGVGLKKLEILK 171
>UniRef50_A4M089 Cluster: Peptidylprolyl isomerase precursor; n=1;
Geobacter bemidjiensis Bem|Rep: Peptidylprolyl isomerase
precursor - Geobacter bemidjiensis Bem
Length = 234
Score = 33.5 bits (73), Expect = 6.1
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +2
Query: 425 LMNINAATEEQLMTLPGVNRQLAREIVRHR 514
L+++N A++EQLMTLPG+ + A +I+ R
Sbjct: 36 LVDLNLASKEQLMTLPGIGEEEAGKIIDGR 65
>UniRef50_Q88LW4 Cluster: ComEA-related protein; n=4;
Pseudomonas|Rep: ComEA-related protein - Pseudomonas
putida (strain KT2440)
Length = 112
Score = 33.1 bits (72), Expect = 8.1
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 407 SEEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 583
+++ P L ++N A L L G+ + A IV +R+ G F VD+L + GIG L
Sbjct: 44 AQQAPRL-DLNTADALTLQKELNGIGKAKAEAIVAYREANGPFASVDELLEIKGIGNALL 102
Query: 584 ELLRPEI 604
E R ++
Sbjct: 103 ERNRDKV 109
>UniRef50_Q74C77 Cluster: ComEA-related protein; n=1; Geobacter
sulfurreducens|Rep: ComEA-related protein - Geobacter
sulfurreducens
Length = 189
Score = 33.1 bits (72), Expect = 8.1
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +2
Query: 467 LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 595
LPG+ +LAR IV RQ G F + L V GIG L L+
Sbjct: 144 LPGIGPELARRIVCDRQDNGDFSSFEALERVPGIGPKTLMSLK 186
>UniRef50_A1FL53 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=4;
Pseudomonadaceae|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Pseudomonas
putida W619
Length = 110
Score = 33.1 bits (72), Expect = 8.1
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 428 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 604
+N+N A L L G+ + A IV +R G F VD+L + GIG LE R ++
Sbjct: 48 LNLNRADAITLQQGLNGIGKAKAEAIVAYRDAHGPFASVDELLEIKGIGNALLERNRDKL 107
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,849,026
Number of Sequences: 1657284
Number of extensions: 13506291
Number of successful extensions: 33738
Number of sequences better than 10.0: 243
Number of HSP's better than 10.0 without gapping: 32391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33692
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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