Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N14
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           28   1.3  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.0  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   7.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   7.0  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   9.3  

>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 365 LNKSSLSHTFSLPPSEEYPELMNI---NAATEEQLMTLPGVNRQLAREIVRHR 514
           +N +SLS   +  P  ++P   +      +TE    TLP +N    RE+ +H+
Sbjct: 237 INSTSLSFVDAKKPGSKWPSQYDFPKKTKSTEIPFKTLPSLNINNERELTKHK 289


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 371 KSSLSHTFSLPPSEEYPELMNINAATEEQLMTL 469
           K S S+T S    + YP + +INA T+  + T+
Sbjct: 47  KGSTSYTISFNKCQAYPNINSINALTDGAVCTV 79


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
 Frame = -3

Query: 768  TIFAAISWLSPGTH*SWNTLDELIEHSLLSEGKRMLSNECAQELARDNCFLVCVHISGLS 589
            TIF +IS  S G   S  T+      +  SE +   ++  +          +   +S  S
Sbjct: 745  TIFTSISQSSDGET-SGYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQS 803

Query: 588  --NSSLSAPIPETNARSSTLLKRPIICLWRTISRASCLFTPGRVISCSSVAALMFISSGY 415
              NSS S+PI   +  SST +   I         AS  +T   + S SS+A+  F +SG+
Sbjct: 804  SMNSSYSSPISSNSVTSSTSIISSI---------ASSSYT--SIPSISSIASSFFDASGF 852

Query: 414  SS 409
            +S
Sbjct: 853  TS 854


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 668 VCYLMSVHRSWPVTTVSLCAYIFLVSVILV 579
           V Y + V   WP  T  +C  +FL+  I+V
Sbjct: 74  VIYALRVPNWWPCKTTVVCLILFLLFWIIV 103


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 530 FKRVDDLALVSGIGADKLELLRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSS 709
           FKR D+L+L S         L  ++ + ++ Q++   S A  L+ +R   + +  ++N S
Sbjct: 128 FKRHDELSLKSLNSLHPSSALSKKLGSTSQHQIATPKSSASLLNILRSLHDEQKNTLNIS 187

Query: 710 SVFQ 721
           SV Q
Sbjct: 188 SVKQ 191


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 690 SLLSEGKRMLSNECAQELARDN 625
           +LL E  R + N+CAQ L RD+
Sbjct: 112 NLLFENYRQVLNDCAQVLQRDS 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,628
Number of Sequences: 5004
Number of extensions: 59514
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)