Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N14
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical...    42   4e-04
AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    30   1.6  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    29   3.7  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    28   6.6  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    28   8.7  

>AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical
           protein ZK973.1 protein.
          Length = 745

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 33/49 (67%)
 Frame = +2

Query: 428 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGA 574
           +++N A++  L  + G+N + A+EIV++R+  GRF+   +L  V GIGA
Sbjct: 513 VDLNTASKNLLQRINGLNEKTAKEIVQYREQNGRFRSRAELKEVKGIGA 561


>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 383 SHTFSLPPSEEYPELMNINAAT 448
           +H+FSLPP  + PE +N++A T
Sbjct: 12  THSFSLPPEYDCPENVNVSATT 33


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
            protein 36 protein.
          Length = 1249

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 584  ELLRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSS--SVFQL 724
            E+   E C    K+ S+A+   +S+D     +E R CS + +  S+FQ+
Sbjct: 1190 EVKNEETCEENEKRKSKANDVCYSIDDDDSENERRPCSTSPTIVSIFQI 1238


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 690 SLLSEGKRMLSNECAQELARDNCFLVCVHISGLSNSSLSAPIPETNARSSTLLKR 526
           S+  E   + SN   + L   +C   CV ++G S SSLS+     NA    ++ R
Sbjct: 104 SMRFESSSLFSNTLTESLETASC---CVSVAGSSRSSLSSSSNSANASYDDMVIR 155


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = +2

Query: 452 EQLMTLPGVN---RQLAREIVRHR----QMIGRFKRVDDLALVSGIGADKLELLRPEICT 610
           E+L++LP      +++ +++ RHR    Q+I +   VDD+  +S   A     ++ E+  
Sbjct: 478 EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKMNVDDIRTISPFLAKLPTSIKDELAK 537

Query: 611 HTRKQLSR 634
            TRK L +
Sbjct: 538 STRKGLEQ 545


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = +2

Query: 452 EQLMTLPGVN---RQLAREIVRHR----QMIGRFKRVDDLALVSGIGADKLELLRPEICT 610
           E+L++LP      +++ +++ RHR    Q+I +   VDD+  +S   A     ++ E+  
Sbjct: 478 EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKMNVDDIRTISPFLAKLPTSIKDELAK 537

Query: 611 HTRKQLSR 634
            TRK L +
Sbjct: 538 STRKGLEQ 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,016,400
Number of Sequences: 27780
Number of extensions: 335603
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)