Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N12
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    34   0.027
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   3.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.1  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    27   3.1  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   5.4  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    26   5.4  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   7.2  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   7.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.5  

>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 748 QTAAVVXKTKNANLSLLCAYSPPRGGRFQYK 656
           +TAA + + KNAN S  C  +PP  GRF  +
Sbjct: 142 ETAAPIKQPKNANSSSTCTRTPPTSGRFSIR 172


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 192 CGLRHMHLALHSLQLHCQKYHNEQTLPGTPISLRICISKEGL 317
           CG  H  +    L + C+K  N    PG     +  +SKEGL
Sbjct: 34  CGTTHSAITPLDL-IKCRKQVNPNIYPGNIAGFKTILSKEGL 74


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 436 RGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPS 308
           R  SAAE+  S V+   ++F S++  +  FL +   F N++PS
Sbjct: 197 RNPSAAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPS 239


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -3

Query: 499 GSPTTVGTVHHNPSEQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDN 320
           GS  T+GT H++ S+     R+  S+   Y      IKN  +S S ++ +  D+SG+ +N
Sbjct: 201 GSFDTLGT-HYHLSKS----RKSSSSDSLYSVSSMSIKNDSNSDSLSSSSSSDVSGSDEN 255

Query: 319 V 317
           +
Sbjct: 256 L 256


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 448 FGFRRGKSAAENYM-SLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSL 305
           F +R GK   E ++   V D+K  FH+H Y A A       +DN+   +
Sbjct: 128 FDWRTGKLLTELHLRETVRDVK-WFHNHQYFAVAQKKYVYVYDNMGTEI 175


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 593 CIQVASQEYWFWQFIDNSF*SFV 661
           C  VA+   WFW F+ + F  F+
Sbjct: 373 CAAVATSANWFWNFLISFFTPFI 395


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 157 WNYVLIWNYIIQSELSKLT 101
           WNYV++W   I +E + LT
Sbjct: 125 WNYVIVWLTNIAAEYTSLT 143


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 593 CIQVASQEYWFWQFIDNSF*SFV 661
           C  VA+   WFW F+ + F  F+
Sbjct: 405 CAAVATASNWFWNFMISFFTPFI 427


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = -1

Query: 480 VQFITTHLNSNLVSVEVKVQQKTICLWLQI*KILFTAIHTQLALSLI*VVHLIMSIPLYL 301
           V+F+  +    L  +    Q  T+ L L+   +LF+ +   L      V+  I S+P  +
Sbjct: 235 VKFLYGYREPTLAILYSPEQTSTVTLPLRKDTVLFSLVTLDLEQRASAVITTIQSLPYDI 294

Query: 300 YRFLVILVSLAKSAHCGIFGNEAV 229
           Y  + I   L  S   G  GNE +
Sbjct: 295 YASVSIPTPLGGSLLLG--GNELI 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,709,333
Number of Sequences: 5004
Number of extensions: 82848
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)