Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N12
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 36 0.028
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 33 0.20
10_08_0487 - 18253355-18253408,18255645-18257495 30 1.9
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 29 3.2
07_01_0088 + 684471-685154,685271-685834,685938-686222 29 4.3
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583... 28 7.5
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 28 7.5
12_02_1127 - 26334225-26334500,26334600-26334761,26334849-263349... 28 9.9
02_04_0027 - 19014033-19014127,19014219-19014315,19014560-190146... 28 9.9
01_01_0418 - 3142659-3145622 28 9.9
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 36.3 bits (80), Expect = 0.028
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHS-YTACAFLDISGAFDNVNPSLLIQILSDIGV 275
Q GF +G+ +EN + T++ + H+ T LD + AFD+VN L QILS G
Sbjct: 6 QTGFLKGRCISENLI-YATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGF 64
Query: 274 PGKVCSLWYFW 242
P W W
Sbjct: 65 PDN----WISW 71
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 33.5 bits (73), Expect = 0.20
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -3
Query: 532 LDECNLCILNSGSPTTVGTVHHNPSE-QQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTA 356
L C++ IL+ T + V Q GF +G+ +EN + I+ + T
Sbjct: 993 LQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGRCISENLIYATELIQACYRRKCQTI 1052
Query: 355 CAFLDISGAFDNVNPSLLIQILSDIGVP 272
LD + AFD+V S L +IL+ G P
Sbjct: 1053 IVKLDFTKAFDSVIWSSLFKILAVRGFP 1080
>10_08_0487 - 18253355-18253408,18255645-18257495
Length = 634
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 192 CGLRHMHLA-LHSLQL-HCQKYHNEQTLPGTPISLRICISKEGLTLSNAPLISRKAQAVY 365
C +RH+ L + QL C+ + QT I L++ SKE L N PL +K +++
Sbjct: 571 CPIRHLLLGDIKKEQLLQCETFSTRQTNTEQVIKLQVSNSKEIQELQNTPLYLQKDLSIF 630
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 418 ENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSLLIQILSDIGVPGKVCSLWY 248
E Y+SL D H Y C + + NPSL + L +G ++ ++W+
Sbjct: 708 EPYLSLTIDRLRRAHK-PYLKCLLVQVIANAFYYNPSLTLATLHKLGAVTEIFNIWF 763
>07_01_0088 + 684471-685154,685271-685834,685938-686222
Length = 510
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 328 FDNVNPSLLIQILSDIGVPGKVCSLWYF 245
F++V P L LS +GVP KV + W+F
Sbjct: 336 FEHVFPPALAPSLSFVGVPRKVPAPWFF 363
>05_02_0031 -
5832475-5832696,5832789-5833064,5833303-5833380,
5833464-5833550,5833639-5833699,5833792-5833880,
5834001-5834098,5834197-5834296,5834876-5834953
Length = 362
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 753 IYKQLQLX*KPRMQIYPCCVHIVLLEVDGFNTKL 652
+Y+ Q+ PR + PCC+ LL + KL
Sbjct: 318 LYRPYQMNSSPRSPLSPCCISPELLSPESMGVKL 351
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -3
Query: 571 ASSNSRGNDVFNLLDECNLCILNSGSPTTVGTVHHNPSEQQFGFRRGKSAAENYMSLVTD 392
AS + G+D D NL N GSP G + E+ G RRG M+L D
Sbjct: 270 ASGETDGSD-----DRGNLSTANEGSPNQDG----DKKEEGEGSRRGSKGTRKKMALEAD 320
Query: 391 IK 386
+K
Sbjct: 321 LK 322
>12_02_1127 -
26334225-26334500,26334600-26334761,26334849-26334938,
26335075-26335236,26335330-26335431,26335562-26335633,
26335716-26335851,26335939-26336120,26336387-26336406,
26336440-26336521,26336612-26336713,26336796-26336909,
26337412-26337462,26337583-26337651,26337972-26338049,
26338357-26338458,26338785-26338865,26339008-26339109,
26339217-26339576
Length = 780
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 374 VKRIF-YICNQRH---IVFCCTFTSTETKLLFRWVVMNCTYGGWRSGI*NAKITFI*QIE 541
++RIF ++ R V C T + T LL +W+ + T G + +G A+ F QIE
Sbjct: 314 IRRIFEFVAESRSSEAFVALCLLTVSGTSLLTQWLGFSDTLGAFLAGAILAETNFRTQIE 373
>02_04_0027 -
19014033-19014127,19014219-19014315,19014560-19014673,
19014759-19014923,19015169-19015306,19015402-19015478,
19015572-19015686,19015756-19015861,19016182-19016243,
19016407-19016472,19016628-19016810,19017359-19017415,
19017848-19017896,19017983-19018131,19019203-19019250,
19020061-19020201
Length = 553
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 355 CAFLDISGAFDNVNPSLLIQILSDIGVPGKVC 260
C+ L+I +P LLI +S+ GVP +C
Sbjct: 197 CSDLEIKDLLSKSDPFLLISRISESGVPVPIC 228
>01_01_0418 - 3142659-3145622
Length = 987
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = -3
Query: 538 NLLDECNLCILNSGSPTTVGTVHHNPSEQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYT 359
N + NL IL+ S GT+HH ++ S+A M ++ ++ + S T
Sbjct: 735 NTCEFANLRILDLASNNFSGTLHHKWLKRLKSMMETSSSATLLMQYQHNVHSTTYQFS-T 793
Query: 358 ACAFLDISGAFDNVNPSLLIQILSDIGVPGKV 263
+ A+ F + +L++ +SD + G +
Sbjct: 794 SIAYKGYEVTFTKILRTLVVIDVSDNALHGSI 825
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,162,723
Number of Sequences: 37544
Number of extensions: 528520
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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