Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N12
(798 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 47 3e-05
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 45 1e-04
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 44 2e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 43 6e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 42 7e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 42 7e-04
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 41 0.002
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 40 0.004
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 40 0.005
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 38 0.021
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 38 0.021
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 37 0.028
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 37 0.037
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 36 0.049
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 36 0.049
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 36 0.049
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 36 0.049
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 36 0.049
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 36 0.049
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 34 0.26
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 34 0.26
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 33 0.45
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 32 0.79
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 32 0.79
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 32 0.79
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 32 0.79
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 5.6
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 29 7.4
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 46.8 bits (106), Expect = 3e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = -3
Query: 709 LSLLCAYSPPRGGRFQYKTLKTIINKLPKPVFLAGDLNAHHVAFGCASSNSRGNDVFNLL 530
++++ AY PP F + I+ L L GDLN+ +G +N+RG + ++
Sbjct: 101 INIVNAYIPP-SQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVI 159
Query: 529 DECNLCILNSGSPTTVGTVHHN 464
E +L +LN GSPT + T HN
Sbjct: 160 LENSLIVLNDGSPTHLST--HN 179
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 45.2 bits (102), Expect = 1e-04
Identities = 25/76 (32%), Positives = 34/76 (44%)
Frame = -3
Query: 544 VFNLLDECNLCILNSGSPTTVGTVHHNPSEQQFGFRRGKSAAENYMSLVTDIKNSFHSHS 365
+ L ++C L LN T H+ QFGFR E + T+I+ +F
Sbjct: 520 ISKLFEKCLLIRLNQHQ-----TYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYRE 574
Query: 364 YTACAFLDISGAFDNV 317
Y FLD+S AFD V
Sbjct: 575 YCTAVFLDVSQAFDKV 590
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 44.4 bits (100), Expect = 2e-04
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = -3
Query: 751 LQTAAVVXKTKNANLSLLCAYSPPRGGRFQYKT--LKTIINKLPKPVFLAGDLNAHHVAF 578
+Q A V +T +S Y PPR F + T K I+ + +AGD NA H +
Sbjct: 89 VQLAPAVIETALGPISFGAVYCPPR---FAWTTDEFKDILEEFQTKFIVAGDWNASHWLW 145
Query: 577 GCASSNSRGNDVFNLLDECNLCILNSGSPT 488
G SN RG + NL+ + L +G PT
Sbjct: 146 GAGRSNQRGIALANLVLNSEVDSLATGGPT 175
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/47 (42%), Positives = 23/47 (48%)
Frame = -3
Query: 457 EQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
E QFGFR G E +V I ++ S Y FLDI AFD V
Sbjct: 546 EHQFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRV 592
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 42.7 bits (96), Expect = 6e-04
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -3
Query: 754 YLQTAAVVXKTKNANLSLLCAYSPPRGGRFQYKTLKTIINKLPKPVFLAGDLNAHHVAFG 575
YLQ+ ++ + N + +L Y PPR + + ++ N L AGD NA H +G
Sbjct: 87 YLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFME-FFNTLGDRFIAAGDYNAKHTHWG 145
Query: 574 CASSNSRGNDVFNLL--DECNLCILNSGSPT 488
+ +G ++N L E L ++ G PT
Sbjct: 146 SRLVSPKGKQLYNALTKPENKLDYVSPGKPT 176
Score = 38.3 bits (85), Expect = 0.012
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
QFGFR E + ++I+ +F Y FLD++ AFD V
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRV 588
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = -3
Query: 751 LQTAAVVXKTKNANLSLLCAYSPPRGGRFQYKTLKTIINKLPKPVFLAGDLNAHHVAFGC 572
++ A+ ++K L++ Y P +TL N P + GD N H +G
Sbjct: 84 IEAIAINIESK-LKLNIFSTYISPTKN-ITNQTLHNTFNIQQTPSLITGDFNGWHHPWGS 141
Query: 571 ASSNSRGNDVFNLLDECNLCILNSGSPTTVGTVHHN 464
++N RG +D +L +LN SPT T HN
Sbjct: 142 PTTNKRGKITHRFIDNMHLILLNDKSPTHFST--HN 175
Score = 33.5 bits (73), Expect = 0.34
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = -3
Query: 460 SEQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSLLIQILSD 284
+++QFGF++GKS ++ L D + S +T+ LD S AFD V +IQ L +
Sbjct: 540 NDKQFGFKKGKSTSD--CLLYVDYLIT-KSKMHTSLVTLDFSRAFDRVGVHSIIQQLQE 595
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 42.3 bits (95), Expect = 7e-04
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = -3
Query: 754 YLQTAAVVXKTKNANLSLLCAYSPPRGGRFQYKTLKTIINKLPKPVFLAGDLNAHHVAFG 575
YLQ+ ++ + N + +L Y PPR + + ++ N L AGD NA H +G
Sbjct: 87 YLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFME-FFNTLGDRFIAAGDYNAKHTHWG 145
Query: 574 CASSNSRGNDVFNLL--DECNLCILNSGSPT 488
+G ++N L E L ++ G PT
Sbjct: 146 SRLVTPKGKQLYNALTKPENKLDYVSPGKPT 176
Score = 38.3 bits (85), Expect = 0.012
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
QFGFR E + ++I+ +F Y FLD++ AFD V
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRV 588
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = -3
Query: 691 YSPPRGGRFQYKT-LKTIINKLP--KPVFLAGDLNAHHVAFGCASSNSRGNDVFNLLDEC 521
Y+PP Q++ L+ ++N +P + GDLNA +G SN+RG V + ++
Sbjct: 93 YAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLL 152
Query: 520 NLCILNSG-SPT 488
+L +LN G PT
Sbjct: 153 DLVLLNDGFKPT 164
Score = 34.7 bits (76), Expect = 0.15
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -3
Query: 454 QQFGFRRGKSAAENYMSLVTDIKNSFH-------SHSYTACAFLDISGAFDNVNPSLLIQ 296
QQ+GFR+GKS + S+ + + S Y A LD+ AF+ +++
Sbjct: 513 QQYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILG 572
Query: 295 ILSDIGVP 272
+ ++GVP
Sbjct: 573 AMRNLGVP 580
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 39.9 bits (89), Expect = 0.004
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = -3
Query: 754 YLQTAAVVXKTKNANLSLLCAYSPPRGGRFQYKTLKTIINKLPKPVFLAGDLNAHHVAFG 575
++Q ++V T +L Y P R + + II + + GD NA H +G
Sbjct: 89 HIQLSSVKVATGLGDLQFSAIYCSP-STRIEERHFTDIIRACGQRYLVGGDWNARHWLWG 147
Query: 574 CASSNSRGNDVFNLLDECNLCILNSGSPTTVGTV-HHNPSEQQFGFRRG 431
++ RG ++ L IL +GSPT V H PS F G
Sbjct: 148 DTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAVYHG 196
Score = 39.1 bits (87), Expect = 0.007
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 457 EQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
+ QFGFR+G S E L I +F Y F+D+ AFD V
Sbjct: 547 DHQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRV 593
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSLLIQILSDIG 278
QFGFR+G+ + + + + + S + Y F+D GAFDNV S + L+D+G
Sbjct: 544 QFGFRQGRCVEDAWRHVKSSVGAS--AAQYVLGTFVDFKGAFDNVEWSAALSRLADLG 599
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 37.5 bits (83), Expect = 0.021
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -3
Query: 475 VHHNPSEQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSLLIQ 296
+H+ Q+GFR G + + L IK S S LDI AFD V L+
Sbjct: 565 IHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLH 624
Query: 295 ILSDIGVP 272
L IG P
Sbjct: 625 KLKMIGTP 632
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 640 INKLPKPVFLAGDLNAHHVAFGCASSNSRGNDVFNLLDECNLCILNSGSPTTVGTVH 470
I+++ + GD N+ H A+ C +N G + L D IL PT + H
Sbjct: 149 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNH 205
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 37.5 bits (83), Expect = 0.021
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -3
Query: 475 VHHNPSEQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSLLIQ 296
+H+ Q+GFR G + + L IK S S LDI AFD V L+
Sbjct: 513 IHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLH 572
Query: 295 ILSDIGVP 272
L IG P
Sbjct: 573 KLKMIGTP 580
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 640 INKLPKPVFLAGDLNAHHVAFGCASSNSRGNDVFNLLDECNLCILNSGSPTTVGTVH 470
I+++ + GD N+ H A+ C +N G + L D IL PT + H
Sbjct: 97 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNH 153
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 37.1 bits (82), Expect = 0.028
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 472 HHNPSEQQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
H+ QF F A E + T+I+ +F Y FLD++ AFD V
Sbjct: 78 HNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRV 129
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 36.7 bits (81), Expect = 0.037
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLLIQI 293
QFGFR+ + + + I +F Y + FLDIS AFD V + LL+++
Sbjct: 593 QFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
Score = 30.3 bits (65), Expect = 3.2
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -3
Query: 613 LAGDLNAHHVAFGCASSNSRGNDVFNLLD-ECNLCILNSGSPTTV-GTVHHNPSEQQFGF 440
L GD NA H +GC + RG ++ + + I+ +G T NPS F
Sbjct: 150 LCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSI 209
Query: 439 RRGKSAAENYMSLVTDIKN 383
+G E +S D+ +
Sbjct: 210 CKGLGRFEKRISSGADLSS 228
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLLIQI 293
QFGFR+ + + I +F Y + FLDIS AFD V + LL+++
Sbjct: 477 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 530
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -3
Query: 613 LAGDLNAHHVAFGCASSNSRGNDVFNLLDECNLC-ILNSGSPTTV-GTVHHNPSEQQFGF 440
L GD NA H +GC + RG ++ + + I+ +G T NPS F
Sbjct: 34 LCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSI 93
Query: 439 RRGKSAAENYMSLVTDIKN 383
+G E +S D+ +
Sbjct: 94 CKGLGRLEKRISSSADLSS 112
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLLIQI 293
QFGFR+ + + I +F Y + FLDIS AFD V + LL+++
Sbjct: 605 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 658
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLLIQI 293
QFGFR+ + + I +F Y + FLDIS AFD V + LL+++
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -3
Query: 613 LAGDLNAHHVAFGCASSNSRGNDVFNLLDECNLC-ILNSGSPTTV-GTVHHNPSEQQFGF 440
L GD NA H +GC + RG ++ + + I+ +G T NPS F
Sbjct: 150 LCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSI 209
Query: 439 RRGKSAAENYMSLVTDIKN 383
+G E +S D+ +
Sbjct: 210 CKGLGRLEKRISSSADLSS 228
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLLIQI 293
QFGFR+ + + I +F Y + FLDIS AFD V + LL+++
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
Score = 33.5 bits (73), Expect = 0.34
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -3
Query: 613 LAGDLNAHHVAFGCASSNSRGNDVFNLLDECNLC-ILNSGSPTTV-GTVHHNPSEQQFGF 440
L GD NA H +GC + RG ++ + + I+ +G T NPS F
Sbjct: 150 LCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSI 209
Query: 439 RRGKSAAENYMSLVTDIKN 383
+G E +S V D+ +
Sbjct: 210 CKGLGRLEKRISSVADLSS 228
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLLIQI 293
QFGFR+ + + I +F Y + FLDIS AFD V + LL+++
Sbjct: 555 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 608
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -3
Query: 613 LAGDLNAHHVAFGCASSNSRGNDVFNLLDECNLC-ILNSGSPTTV-GTVHHNPSEQQFGF 440
L GD NA H +GC + RG ++ + + I+ +G T NPS F
Sbjct: 112 LCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSI 171
Query: 439 RRGKSAAENYMSLVTDIKN 383
+G E +S D+ +
Sbjct: 172 CKGLGRLEKRISSSADLSS 190
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLLIQI 293
QFGFR+ + + I +F Y + FLDIS AFD V + LL+++
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -3
Query: 613 LAGDLNAHHVAFGCASSNSRGNDVFNLLDECNLC-ILNSGSPTTV-GTVHHNPSEQQFGF 440
L GD NA H +GC + RG ++ + + I+ +G T NPS F
Sbjct: 150 LCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSI 209
Query: 439 RRGKSAAENYMSLVTDIKN 383
+G E +S D+ +
Sbjct: 210 CKGLGRLEKRISSSADLSS 228
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 33.9 bits (74), Expect = 0.26
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLL 302
QFGFR E +V + + Y AFLDI AFD V +P LL
Sbjct: 550 QFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLL 600
Score = 33.1 bits (72), Expect = 0.45
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = -3
Query: 748 QTAAVVXKTKNANLSLLCAYSPPRGGRFQYKTLKTIINKLPKPVFLAGDLNAHHVAFGCA 569
Q A V +T +++ Y PP R+ K++ L GD NA H +G
Sbjct: 91 QIARVHLQTSVGTVTVAAVYLPP-AERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNP 149
Query: 568 SSNSRGNDVFNLLDECNLCILNSGSPT 488
S RG + ++ +L +G PT
Sbjct: 150 RSCPRGKMLQEVIAHGQYQVLATGEPT 176
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 33.9 bits (74), Expect = 0.26
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV-NPSLL 302
QFGFR E +V + + Y AFLDI AFD V +P LL
Sbjct: 352 QFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLL 402
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 33.1 bits (72), Expect = 0.45
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = -3
Query: 748 QTAAVVXKTKNANLSLLCAYSPPRGGRFQYKTLKTIINKLPKPVFLAGDLNAHHVAFGCA 569
Q A V +T +++ Y PP R+ K++ L GD NA H +G
Sbjct: 91 QIARVHLQTSVGTVTVAAVYLPP-AERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNP 149
Query: 568 SSNSRGNDVFNLLDECNLCILNSGSPT 488
S RG + ++ +L +G PT
Sbjct: 150 RSCPRGKMLQEVIAHGQYQVLATGEPT 176
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
QFGFR+ A + I +F + FLDI+ AFD V
Sbjct: 149 QFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRV 193
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
QFGFR+ A + I +F + FLDI+ AFD V
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRV 640
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
QFGFR+ A + I +F + FLDI+ AFD V
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRV 640
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 451 QFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNV 317
QFGFR+ A + I +F + FLDI+ AFD V
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRV 640
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -3
Query: 610 AGDLNAHHVAFGCASSNSRGNDVFNLLDECNLCILNSGSP----TTVGTVHHN 464
AGD N H +G N RG + NL+ + L +G P V T+ HN
Sbjct: 56 AGDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLTHN 108
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +1
Query: 415 FLLHFYLYGNQIAVQMGCDELYLRWLEIRNLECKDYIHLTD*IHHYLWNLMKHNQMQHDV 594
+++ FYL GNQI + C ++Y ++ + L+ +D++ I ++ K +++ D
Sbjct: 902 YMIDFYLTGNQIF--LSCIDIYSKFASLVELKSRDWLEAKRAITKIFNDMGKPQEIKADK 959
Query: 595 HSS 603
S+
Sbjct: 960 DSA 962
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,135,186
Number of Sequences: 53049
Number of extensions: 944287
Number of successful extensions: 2051
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2050
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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