Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N12
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 33 0.31
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 30 2.2
U28941-3|AAM98025.1| 799|Caenorhabditis elegans Temporarily ass... 29 5.1
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass... 29 5.1
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass... 29 5.1
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 28 6.7
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 8.9
AF068713-4|AAC17795.2| 398|Caenorhabditis elegans Hypothetical ... 28 8.9
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 28 8.9
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 691 YSPPRGGRFQYKTLKTIINKL---PKPVFLAGDLNAHHVAFGC-ASSNSRGNDVFNLLD 527
Y PPR + L T + + ++GD+NAHH A+ S ++RG ++ L+D
Sbjct: 7 YVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELID 65
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 331 AFDNVNPSLLIQILSDIGVPGKVCSLWY 248
AFD VN SLL+Q L D G+ C+ W+
Sbjct: 3 AFDQVNHSLLLQKLHDFGINPLFCN-WF 29
>U28941-3|AAM98025.1| 799|Caenorhabditis elegans Temporarily
assigned gene nameprotein 149, isoform d protein.
Length = 799
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 121 SELSKLTCSDSSISIPSVLLCRN--YERVEHDGHADMIHRP 5
S KLT + S S + N +ER+EHD H DM + P
Sbjct: 679 SNKKKLTPKNPSFEATSRQVRTNDVFERIEHDEHDDMTYAP 719
>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
assigned gene nameprotein 149, isoform a protein.
Length = 1091
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 121 SELSKLTCSDSSISIPSVLLCRN--YERVEHDGHADMIHRP 5
S KLT + S S + N +ER+EHD H DM + P
Sbjct: 679 SNKKKLTPKNPSFEATSRQVRTNDVFERIEHDEHDDMTYAP 719
>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
assigned gene nameprotein 149, isoform b protein.
Length = 1107
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 121 SELSKLTCSDSSISIPSVLLCRN--YERVEHDGHADMIHRP 5
S KLT + S S + N +ER+EHD H DM + P
Sbjct: 679 SNKKKLTPKNPSFEATSRQVRTNDVFERIEHDEHDDMTYAP 719
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 490 LEIRNLECKDYIHLTD*IHHYLW--NLMKHNQMQHDVHSSRQPGILVL 627
LE RN+ CK + L + LW N+ N VH S IL++
Sbjct: 94 LEYRNISCKTNLSLDSYVSERLWTPNVCFVNSKSTQVHKSPASNILLI 141
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 553 LWNLMKHNQMQHDVHSSRQPGILVLAV 633
+WN+ K N HDVH+ ++ + +A+
Sbjct: 1146 IWNVTKRNHDAHDVHADKEGFLTAVAL 1172
>AF068713-4|AAC17795.2| 398|Caenorhabditis elegans Hypothetical
protein T24A6.8 protein.
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 166 NSSWNYVLIWNYIIQSELSKLTCSDSSISIPSVLLCRNYERVEHDGHADM 17
N W + + + I+ SKL+ SD + P LC NYE + H D+
Sbjct: 150 NPDWTNIRLKDLILSP--SKLSMSDKVGTFPDWPLCPNYEFPDQIVHRDI 197
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -3
Query: 454 QQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSLLIQILSDIGV 275
+Q GFRR S ++ SL ++ F+D AFD+V + + L + G
Sbjct: 655 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 714
Query: 274 PGKVCSL 254
G L
Sbjct: 715 DGAYIDL 721
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -3
Query: 454 QQFGFRRGKSAAENYMSLVTDIKNSFHSHSYTACAFLDISGAFDNVNPSLLIQILSDIGV 275
+Q GFRR S ++ SL ++ F+D AFD+V + + L + G
Sbjct: 394 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 453
Query: 274 PGKVCSL 254
G L
Sbjct: 454 DGAYIDL 460
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,057,495
Number of Sequences: 27780
Number of extensions: 482882
Number of successful extensions: 1073
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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