Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N11
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.1  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    21   9.1  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   9.1  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   9.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 542 CCIQCLNETTLI 577
           CC  C+N T+L+
Sbjct: 728 CCAICVNATSLV 739


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 77  TRNTKYNLKMYRLRFE 30
           T+++KY +K  R+RF+
Sbjct: 57  TKSSKYPIKRKRVRFQ 72


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 394 IRNYLKNNRQKGNFKQKNRNFILLC 468
           +R++  +N+Q     Q + N  +LC
Sbjct: 210 MRSFFSDNKQDDKIPQISDNLYILC 234


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 394 IRNYLKNNRQKGNFKQKNRNFILLC 468
           +R++  +N+Q     Q + N  +LC
Sbjct: 210 MRSFFSDNKQDDKIPQISDNLYILC 234


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 408 KIIPYSNLCNN 376
           K++P   LCNN
Sbjct: 148 KVVPLKKLCNN 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,071
Number of Sequences: 336
Number of extensions: 2329
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)