Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N09
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    62   2e-10
AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical ...    36   0.013
AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a prote...    31   0.37 

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = +1

Query: 103 PTLASAPHSIANGFKHLLAIAAVTXVEFEXATTIKEFIKDPSKF 234
           PTLAS  HS+ANG +++L +AAVT V F+ A TIK FI DPSKF
Sbjct: 232 PTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275


>AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical
           protein T12B5.11 protein.
          Length = 321

 Score = 35.5 bits (78), Expect = 0.013
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 60  WSCXCRCSFFGSWXPNSCFSPAFHRQWFQ 146
           W C  +CS FG    N      FH QWFQ
Sbjct: 208 WKCAKKCSLFGDKLENKLIDHLFHFQWFQ 236


>AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a protein
           protein 24 protein.
          Length = 219

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 60  WSCXCRCSFFGSWXPNSCFSPAFHRQWFQ 146
           W C  +CS  G    +      FH QWFQ
Sbjct: 106 WKCAKKCSLLGDKLESRLIDHLFHFQWFQ 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.131    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,819,997
Number of Sequences: 27780
Number of extensions: 77039
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)