Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N05
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   2.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   5.3  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   5.3  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.1  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   7.1  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 252 SFSFFKFNNTLVYINGNWLCSVI*CTCI*FAPFLNSR 142
           SF F KF      ++G+W+ S+  C+   FA F+  R
Sbjct: 877 SFDFNKFTRQASKVHGSWISSL--CSSQAFAEFIGDR 911


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 112 IKLNMGKEEVTAVKKRRKL-NTSTSNDG---TKPVPVDVYKRVVEFEEAEAHLRPADKDA 279
           +K N+     T  KKRR+  NTS  NDG         + +++ + ++E++  +   ++ +
Sbjct: 238 LKRNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEKNIIYDESD--VNKTNQSS 295

Query: 280 AFFNKTCQDIRXLFKE 327
            F +K+  DI   F E
Sbjct: 296 FFIDKSLVDIDFAFDE 311


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 160 RKLNTSTSNDGTKPVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKTCQDIR 312
           +K+ T T  D  KP+P D+ ++ + F   +   R    D    ++   D+R
Sbjct: 709 KKVPTETGIDA-KPIPQDLLRKYIHFAREKVFPRLQQMDEEKISRLYSDMR 758


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 250 LQLLQIQQHACIHQRELALFRHLMYLYL 167
           L++L+I  +A IHQ E+  F HL  LY+
Sbjct: 781 LRILRISNNA-IHQLEVDQFPHLRTLYM 807


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 301 GMFY*KRQHPYQLDADELQLLQIQQHACIHQRELALFRHLMYLYLICA 158
           G+ Y +  HP+  + D    L++  +    Q+ L   + + Y+Y  CA
Sbjct: 82  GLAYLRLGHPHLANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRECA 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,505
Number of Sequences: 5004
Number of extensions: 31938
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)