Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N05
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 60 2e-09
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653... 31 0.78
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 29 2.4
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097... 29 3.2
12_01_0003 - 11806-12363,12659-13099 29 4.2
11_01_0004 - 13421-13978,14274-14714 29 4.2
07_03_1393 - 26245105-26246862 28 5.5
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 28 5.5
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 27 9.7
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +1
Query: 436 EKVRTRAGRDALHKEKQRVDSTHLLLXNLLYEADHLXKEVTKCLQFXSKDEEIDLVPLEE 615
E+ R +A +A K VDST L L NLLYE +H K + CL F +K I+LVP EE
Sbjct: 89 EEDRVKAETEAA---KAPVDSTTLQLHNLLYEKNHYVKAIRACLDFQTKYPGIELVPTEE 145
Query: 616 FYKNAPPDI 642
F++ AP DI
Sbjct: 146 FHRAAPADI 154
>11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,
6534267-6534316,6535110-6537065,6537458-6538209
Length = 1075
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 151 KKRRKLNTSTSNDG-TKPVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKTCQDIR 312
++RR + S S D ++P V V +F E ++ LRPAD + FN+ ++ R
Sbjct: 983 RQRRSIEPSFSRDRLSQPRKHSVASAVPKFGEWDSPLRPADNYTSIFNRAREEKR 1037
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 445 RTRAGRDALHKEKQRVDSTHLLLXNLLYEADHLXKEVTKCLQFXSKDEEIDLVPLEEFYK 624
R R L KEK+ DS+ L + L + + ++ K LQ+ ++ +E+D + LEE K
Sbjct: 263 RKRIATKGLGKEKEGEDSSPLYVDELDEQPRPMGQKRAKKLQY-AQSKEVDHIDLEELDK 321
>06_03_0902 -
25806912-25807190,25807876-25808094,25809469-25809711,
25809810-25809974,25810141-25810721,25810940-25811048,
25811158-25811250,25811474-25811535,25811895-25811967,
25812879-25813007,25814107-25814229
Length = 691
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 118 LNMGKEEVTAVKKRRKLNTSTSNDGTKPVPVDVYKRVVEFEEAEAHLRPADKDAA 282
L+ E +++ RK N G + +D YK VV E+ +++ A KD+A
Sbjct: 229 LDQPNERASSMSNHRKKNHVFLEHGVRNGSIDTYKGVVSEEDHDSNPGHARKDSA 283
>12_01_0003 - 11806-12363,12659-13099
Length = 332
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 200 GFVPSFDVLVFNLRRFLTAVTSSFPMFSFI 111
G+VP D LV + F + T+SFP F+
Sbjct: 86 GYVPDLDALVRDCDSFFSTATASFPRRRFL 115
>11_01_0004 - 13421-13978,14274-14714
Length = 332
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 200 GFVPSFDVLVFNLRRFLTAVTSSFPMFSFI 111
G+VP D LV + F + T+SFP F+
Sbjct: 86 GYVPDLDALVRDCDSFFSTATASFPRRRFL 115
>07_03_1393 - 26245105-26246862
Length = 585
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 169 NTSTSNDGTKPVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKT--CQD 306
N +T+ G +PVP D Y RV+ + E R + F N T C+D
Sbjct: 533 NETTTLSGGRPVPFDAYMRVI--VDTEVFYRAKTQVETFNNLTRDCKD 578
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 130 KEEVTAVKKRRKLNTSTSNDGTKPVPVDVYKRVVEFEEAEAH 255
+EE+ ++ ++TSTS DG V + YK++ ++ A+
Sbjct: 137 QEEIANLRMASNVDTSTSGDGIHVVGLQSYKKIEALMQSTAN 178
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 300 ACFIEKGSILISWTQMSFSFFKFNNTLV 217
A F+ KG +SW+ SFS N+LV
Sbjct: 90 ARFMSKGGCAVSWSITSFSLSTLTNSLV 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,137,892
Number of Sequences: 37544
Number of extensions: 180960
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -