Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N05
         (646 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061305-1|AAL28853.1|  616|Drosophila melanogaster LD21694p pro...    64   1e-10
AJ620304-1|CAF04333.1|  616|Drosophila melanogaster THO complex ...    64   1e-10
AE013599-3748|AAF47114.2|  616|Drosophila melanogaster CG2980-PA...    64   1e-10
AY058570-1|AAL13799.1|  553|Drosophila melanogaster LD26007p pro...    29   7.1  
AJ271814-1|CAB72133.1|  553|Drosophila melanogaster Meso18E prot...    29   7.1  
AE014298-2922|AAF49011.1|  553|Drosophila melanogaster CG14233-P...    29   7.1  

>AY061305-1|AAL28853.1|  616|Drosophila melanogaster LD21694p
           protein.
          Length = 616

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 41/65 (63%)
 Frame = +1

Query: 439 KVRTRAGRDALHKEKQRVDSTHLLLXNLLYEADHLXKEVTKCLQFXSKDEEIDLVPLEEF 618
           K + +AGRD LH EK +VD + L L NLLYE  HL KE+ +C +F S+D  ++L+   E+
Sbjct: 51  KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDTSLELLSEAEY 110

Query: 619 YKNAP 633
               P
Sbjct: 111 SSELP 115


>AJ620304-1|CAF04333.1|  616|Drosophila melanogaster THO complex 5
           protein.
          Length = 616

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 41/65 (63%)
 Frame = +1

Query: 439 KVRTRAGRDALHKEKQRVDSTHLLLXNLLYEADHLXKEVTKCLQFXSKDEEIDLVPLEEF 618
           K + +AGRD LH EK +VD + L L NLLYE  HL KE+ +C +F S+D  ++L+   E+
Sbjct: 51  KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDTSLELLSEAEY 110

Query: 619 YKNAP 633
               P
Sbjct: 111 SSELP 115


>AE013599-3748|AAF47114.2|  616|Drosophila melanogaster CG2980-PA
           protein.
          Length = 616

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 41/65 (63%)
 Frame = +1

Query: 439 KVRTRAGRDALHKEKQRVDSTHLLLXNLLYEADHLXKEVTKCLQFXSKDEEIDLVPLEEF 618
           K + +AGRD LH EK +VD + L L NLLYE  HL KE+ +C +F S+D  ++L+   E+
Sbjct: 51  KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDTSLELLSEAEY 110

Query: 619 YKNAP 633
               P
Sbjct: 111 SSELP 115


>AY058570-1|AAL13799.1|  553|Drosophila melanogaster LD26007p
           protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 142 TAVKKRRKLNTSTSNDGTKPVPVDVYKR 225
           T +KK+RK++TST  D T    ++  KR
Sbjct: 389 TTLKKKRKMSTSTDGDSTNYELIEYLKR 416


>AJ271814-1|CAB72133.1|  553|Drosophila melanogaster Meso18E protein
           protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 142 TAVKKRRKLNTSTSNDGTKPVPVDVYKR 225
           T +KK+RK++TST  D T    ++  KR
Sbjct: 389 TTLKKKRKMSTSTDGDSTNYELIEYLKR 416


>AE014298-2922|AAF49011.1|  553|Drosophila melanogaster CG14233-PA
           protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 142 TAVKKRRKLNTSTSNDGTKPVPVDVYKR 225
           T +KK+RK++TST  D T    ++  KR
Sbjct: 389 TTLKKKRKMSTSTDGDSTNYELIEYLKR 416


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,734,134
Number of Sequences: 53049
Number of extensions: 325844
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)