Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_N01
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    29   0.60 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   4.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   5.6  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    26   7.4  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   9.8  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 380 SRRKTSQEPPQSSPLAWTTSSGAP-RSSTERPWVTKALCSYHISRHL*PIWRGGIRPVLT 556
           S+R TS   P++   +   SS     SS    W    L  YH    +  +    ++ V +
Sbjct: 306 SKRDTSSHYPETLKASSKHSSPVKGNSSISSTWTPSNLKIYHSKNSMGLMDLDALKTVAS 365

Query: 557 TSSRTREPRNECSRSKGSEMSALDK 631
            S    +P+N  +   G+E+  LD+
Sbjct: 366 NSKYRTKPKNCKTYGDGTELDTLDE 390


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 365 TGSVESRRKTSQEPPQSSPLAWTTSSGAPRSSTER 469
           TG V+S         +S PL+ + +SG PR+S  R
Sbjct: 470 TGDVKSFDSQESNIIESEPLSASNASGKPRTSVNR 504


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 332 TIATIYHGTSTTGSVESRRKTSQEPPQSSPLAWTTSSGAPRSSTE 466
           T +T Y   S+T SV ++   S     S+P++ T+SS +   S++
Sbjct: 249 TESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQ 293


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 648 SYLRIDLSNADIS--LPFDLEHSFLGSRVRDDV 556
           S L  D+ + D +  LPF L+H+F+G  V  D+
Sbjct: 106 SDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDI 138


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 533 GGIRPVLTTSSRTREPRNECSRSKGSEMSALDKSI 637
           GG+RP  T     R   +  S SK +E S +D  I
Sbjct: 314 GGLRPANTIDGIVRSSLSSSSLSKDTEPSTVDMHI 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,081
Number of Sequences: 5004
Number of extensions: 71497
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)