Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_N01
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 173 2e-43
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 165 4e-41
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 151 9e-37
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 126 2e-29
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 110 1e-24
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313 31 1.1
05_06_0149 - 25991761-25993181,25993246-25993324 29 4.4
07_03_0105 + 13455906-13457198 29 5.9
01_07_0346 + 42889121-42890406,42896115-42896118 29 5.9
01_05_0608 - 23628100-23631486 28 7.8
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 173 bits (420), Expect = 2e-43
Identities = 84/198 (42%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Frame = +1
Query: 220 AGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRESTQDES 399
+G+++WRI+NF+P+PV GKFY GDSYIIL+TT+ + D+HYW+G++++QDE+
Sbjct: 37 SGLEVWRIENFKPVPVPTSSHGKFYMGDSYIILKTTALKNGSFRHDLHYWLGKDTSQDEA 96
Query: 400 GAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGA 579
G AAILTV LD GG AVQ+RE G E+ LSYF+ + GG SGFNHV N
Sbjct: 97 GTAAILTVELDAALGGRAVQYREVQGGETEKLLSYFRPCIMPQPGGVASGFNHVEVNQQD 156
Query: 580 Q-KRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLDLXNDIYVFVGEKAXNVXKLKAISFA 756
R++ +GK V V++V +S+N D F+LD N I+ F G + + KA+
Sbjct: 157 HVTRLYVCQGKHVVHVKEVPFVRSSLNHEDIFILDTANKIFQFNGSNSCIQERAKALEVV 216
Query: 757 NQVRDQDHHGRGKVDIVD 810
++D H G+ +V V+
Sbjct: 217 QYIKDTFHEGKCEVAAVE 234
Score = 60.5 bits (140), Expect = 2e-09
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 11/176 (6%)
Frame = +1
Query: 217 TAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRT-TSDNRNNLSWDIHYWIGRESTQD 393
T +Q+WR+ ++ D K Y GD YI T T D++ I W G++S ++
Sbjct: 406 TGHLQVWRVNGDGKTLLSSSDQSKLYTGDCYIFQYTYTGDDKEECL--IGTWFGKKSVEE 463
Query: 394 ESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNA 573
+ +A L + A Q R G E F FQ+ L +GG SG+ + +
Sbjct: 464 DRTSAISLASKMFQAAKFQAAQARLYEGKEPIQFFVIFQS-LQVFKGGLSSGYKNFIAVN 522
Query: 574 GAQK--------RMFQVK--GKRDVRVRQVDPQIASMNKGDCFVLDLXNDIYVFVG 711
G +F+++ G +++ QVD +S+N C++L N ++ + G
Sbjct: 523 GTDDDTYVEGGLALFRIQGSGSENMQAIQVDAVSSSLNSSYCYILHNGNTVFTWTG 578
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 165 bits (401), Expect = 4e-41
Identities = 79/198 (39%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Frame = +1
Query: 220 AGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRESTQDES 399
+G++IWRI+ + +PV ++ G+F+ GDSY+IL+TT+ + DIHYW+G++++QDE+
Sbjct: 76 SGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEA 135
Query: 400 GAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGA 579
G AAI TV LD GG AVQ+RE G+E+ FLSYF+ + EGG SGF H N
Sbjct: 136 GTAAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEINERE 195
Query: 580 Q-KRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLDLXNDIYVFVGEKAXNVXKLKAISFA 756
R+F +GK V V++V +S+N D F+LD + I+ F G + + KA+
Sbjct: 196 HVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVV 255
Query: 757 NQVRDQDHHGRGKVDIVD 810
++D +H G+ V V+
Sbjct: 256 QYLKDSNHEGKCDVGSVE 273
Score = 66.9 bits (156), Expect = 2e-11
Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 19/234 (8%)
Frame = +1
Query: 67 FSCLLFVLLGSVWARTATK--PQEISGPITSLSDK---NARDKAKVHPAFAN----VGRT 219
F ++F S W + A E G + +L + N + AK P + T
Sbjct: 391 FETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCT 450
Query: 220 AGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRESTQDES 399
+Q+WR+ E ++ + KFY GD YI + + I W G++S QDE
Sbjct: 451 GNLQVWRVNGTEKTFLSFSEQCKFYSGDCYIF-QYSYPGEEGEECLIGTWFGKKSVQDEK 509
Query: 400 GAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGA 579
A + + + AV R G E A F S FQ L +GG +G+ V+ G
Sbjct: 510 TTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIFQN-LVIFKGGVSTGYKKFVSENGI 568
Query: 580 QK--------RMFQVKGK--RDVRVRQVDPQIASMNKGDCFVLDLXNDIYVFVG 711
+ +F+V+G +++ QVD S+N C+VL + ++ ++G
Sbjct: 569 EDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWIG 622
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 151 bits (365), Expect = 9e-37
Identities = 81/198 (40%), Positives = 114/198 (57%)
Frame = +1
Query: 217 TAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRESTQDE 396
T G++IWRI+NF+P+P+ GKF+ GDSYIIL+TT+ +L DIHYWIG++++QDE
Sbjct: 49 TGGLEIWRIENFKPVPIPASSYGKFFMGDSYIILKTTALKNGSLRHDIHYWIGKDTSQDE 108
Query: 397 SGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAG 576
SG AAILTV LD GG AVQ+RE G+E+ FLSYF+ + GG SGF HV
Sbjct: 109 SGTAAILTVELDAALGGRAVQYREIQGNETDKFLSYFRPCIMPQPGGVASGFKHV----- 163
Query: 577 AQKRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLDLXNDIYVFVGEKAXNVXKLKAISFA 756
+V +S+N D F+LD + I+ F G + + KA+
Sbjct: 164 -----------------EVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVV 206
Query: 757 NQVRDQDHHGRGKVDIVD 810
++D H G+ +V V+
Sbjct: 207 QYIKDTFHEGKCEVAAVE 224
Score = 60.1 bits (139), Expect = 2e-09
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 11/188 (5%)
Frame = +1
Query: 181 AKVHPAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYII-LRTTSDNRNNLSWD 357
AK P A + T +Q+WRI + + I + D KFY GD YI D++
Sbjct: 391 AKEEPQ-AYIDCTGSLQVWRINDKDKILLPSADQSKFYTGDCYIFQYMYPGDDKEECL-- 447
Query: 358 IHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGG 537
I W G++S +++ A L + + AVQ R G E F FQ+ +GG
Sbjct: 448 IGSWFGKKSIEEDRVTAISLASKMVESAKFQAVQTRLYEGKEPIQFFVIFQS-FQVFKGG 506
Query: 538 NPSGFNHVVTNAGAQK--------RMFQVKGK--RDVRVRQVDPQIASMNKGDCFVLDLX 687
SG+ + G +F+++G +++ QVD +S+N ++L
Sbjct: 507 LSSGYKKFIAENGIDDDTYLEDGLALFRIQGSGPENMQAIQVDAAASSLNSSYSYILHDG 566
Query: 688 NDIYVFVG 711
N ++ + G
Sbjct: 567 NTVFTWTG 574
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 664 DCFVLDLXNDIYVFVGEKAXNVXKLKAISFANQ 762
D F+LD +DI+V+VG++ +L+A+ +
Sbjct: 652 DVFILDCHSDIFVWVGQQVDVKVRLQALDIGEK 684
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 126 bits (305), Expect = 2e-29
Identities = 70/166 (42%), Positives = 95/166 (57%)
Frame = +1
Query: 313 ILRTTSDNRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESAL 492
I T S +DIH+WIG++S+QDE+G AAI TV LD GG AVQHRE G+ES
Sbjct: 54 ITTTCSKGGGAYLFDIHFWIGKDSSQDEAGTAAIKTVELDTMLGGRAVQHRELQGYESDK 113
Query: 493 FLSYFQTPLTYLEGGNPSGFNHVVTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDCF 672
FLSYF+ + LEGG SGF + R++ KGKR +RV++V +S+N D F
Sbjct: 114 FLSYFKPCIIPLEGGFASGFK-TPEEDKFETRLYICKGKRAIRVKEVPFARSSLNHDDVF 172
Query: 673 VLDLXNDIYVFVGEKAXNVXKLKAISFANQVRDQDHHGRGKVDIVD 810
+LD IY F G + + KA+ +++ H+G V IVD
Sbjct: 173 ILDTEKKIYQFNGANSNIQERAKALEAIQHLKETYHNGVCDVAIVD 218
Score = 61.3 bits (142), Expect = 9e-10
Identities = 38/154 (24%), Positives = 68/154 (44%)
Frame = +1
Query: 145 ITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRT 324
I S +A +V P G+ ++++ + + ++++GKFY GD YI+L T
Sbjct: 376 IKGASKSSAPVDEEVPPLLEGDGK---LEVYCVNGSAKTALPKEELGKFYSGDCYIVLYT 432
Query: 325 TSDNRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSY 504
+ + YWIG++S ++ A + + G + R G E F++
Sbjct: 433 YHSGDKREEFYLTYWIGKDSIPEDQEMAFQTANSIWNSLKGRPILGRIYQGKEPPQFIAL 492
Query: 505 FQTPLTYLEGGNPSGFNHVVTNAGAQKRMFQVKG 606
FQ P+ L+GG SG+ V G + + G
Sbjct: 493 FQ-PMVILKGGISSGYQKFVEEKGLKDETYSGDG 525
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 110 bits (265), Expect = 1e-24
Identities = 62/204 (30%), Positives = 103/204 (50%)
Frame = +1
Query: 187 VHPAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHY 366
V AF VG G+ IW I I + + GKFY G++YIIL T ++HY
Sbjct: 4 VDDAFLGVGDKPGLDIWCIMGSNLIAIEKSLHGKFYTGNTYIILSTVELKSGVRQHNVHY 63
Query: 367 WIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPS 546
W+G E+ +++ A+ + LD G VQ+RET G ES FLSYF+ + ++ G+ S
Sbjct: 64 WVGEEAKEEDCLTASDKAIELDVALGSNTVQYRETQGEESDKFLSYFKPCIIPIQ-GSLS 122
Query: 547 GFNHVVTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLDLXNDIYVFVGEKAXN 726
+ + MF+ +G+ RV +V +S++ FV+D + I++F G +
Sbjct: 123 SHMRIYGDKSKDTTMFRCEGEHVARVTEVPFSRSSLDHKAVFVVDTESKIFLFSGCNSSM 182
Query: 727 VXKLKAISFANQVRDQDHHGRGKV 798
+ KA+ +++ H GR ++
Sbjct: 183 QTRAKALDVVKHLKENRHCGRCEI 206
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/134 (23%), Positives = 57/134 (42%)
Frame = +1
Query: 226 VQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRESTQDESGA 405
+++W + N + ++ + Y GD YII + ++ + W G S ++ A
Sbjct: 402 LKVWLVDNGSVTLLCTEEQEQLYNGDCYIIRYSYIEDGKDYHL-FFAWSGLNSINEDRVA 460
Query: 406 AAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGAQK 585
AA L G+ D G AV + G E +F F++ L +GG + + V+
Sbjct: 461 AASLMSGMIDSVKGHAVVAQVFEGREPEMFFLVFKS-LIIFKGGRSMAYKNFVSQRSDAN 519
Query: 586 RMFQVKGKRDVRVR 627
+Q G RV+
Sbjct: 520 GWYQKNGVALFRVQ 533
>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
Length = 289
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 356 TSTTGSVESRRKTSQEPPQSSPLAWTTSSGAPRSSTER-PWVTK 484
TST + SRR+ + P SS +AWT A R W+TK
Sbjct: 66 TSTYLASSSRRRRKRPPVTSSDVAWTVEDAAIGDELRRGTWMTK 109
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = -1
Query: 494 NKALS*PMVSRCWTAAPPNLSSRPTVRIAAAPDSSCVDSRPIQ*WMSHDRLLRLSEVVRK 315
N A+S ++R AA P++ T R+ APDS V + PI+ SHD L + V+R+
Sbjct: 71 NDAVSADAMARL-AAANPSI----TFRLLPAPDSPDVGAHPIK--RSHDTLKLANPVLRE 123
Query: 314 MMYESP 297
+ P
Sbjct: 124 FLRSLP 129
>07_03_0105 + 13455906-13457198
Length = 430
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 470 VSRCWTAAPPNLSSRPTVRIAAA 402
V R W +A P+L+SRP +AAA
Sbjct: 37 VCRAWRSALPSLASRPLAPVAAA 59
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 329 RTIATIYHGTSTTGSVESRRKTSQEPPQSSPLAWTTSSGAP 451
R+ T G +TTGSV SRR+ + + A T SS P
Sbjct: 125 RSATTKTSGAATTGSVSSRRRARRAAAVARHSAATPSSAPP 165
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/87 (28%), Positives = 37/87 (42%)
Frame = -3
Query: 666 VAFVHRSYLRIDLSNADISLPFDLEHSFLGSRVRDDVVKTGRIPPLQIGQRCLEI**EQS 487
V F S+L+ + SLP LEH +G + TG++P L I L + S
Sbjct: 668 VTFSRASFLQASGNKLHGSLPPSLEHISVGRIYLGSNLLTGQVPQLPISMTRLNL---SS 724
Query: 486 AFVTHGLSVLDRGAPELVVQANGEDCG 406
F++ L L E ++ AN G
Sbjct: 725 NFLSGPLPSLKAPLLEELLLANNNITG 751
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,955,962
Number of Sequences: 37544
Number of extensions: 556668
Number of successful extensions: 1861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -