Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M24
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_21238| Best HMM Match : 7tm_3 (HMM E-Value=6.5e-10)                 29   2.4  
SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)                        27   7.2  
SB_48927| Best HMM Match : DUF922 (HMM E-Value=0.62)                   27   7.2  

>SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 180 THLENQHCQHIQLVFLLKTNTQDT 251
           THL +QH  H Q +FL K + +DT
Sbjct: 85  THLLSQHLLHPQFIFLAKPDAEDT 108


>SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 125 LRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIII 262
           L+YY     +R +TLA + P+   T  A P   +P+   SR   II
Sbjct: 599 LKYYSGGARERRHTLAVLPPYHPST--ADPGSGAPQTNRSRFNSII 642


>SB_21238| Best HMM Match : 7tm_3 (HMM E-Value=6.5e-10)
          Length = 270

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 125 LRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIII 262
           L+YY     +R +TLA + P+   T  A P   +P+   SR   II
Sbjct: 190 LKYYSGGARERRHTLAVLPPYHPST--ADPGSGAPQTNRSRFNSII 233


>SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)
          Length = 222

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -2

Query: 460 IK*YISFVRAFVFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQ 281
           ++ Y   VR +  C M YK CV    K+ V  Y+    +    C   + +  R+  +C +
Sbjct: 56  VRYYKVCVRYYKVCVMYYKVCVK-YYKVCVMYYKVCVRYYKV-CVRYYKVCVRYYKVCVR 113

Query: 280 QAKSLLDYYSV 248
             K  + YY V
Sbjct: 114 YYKVCVRYYKV 124


>SB_48927| Best HMM Match : DUF922 (HMM E-Value=0.62)
          Length = 262

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 427 VFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCK 326
           V  C+L  SCV  +L+        LDHFG+F  K
Sbjct: 4   VLVCLLLASCVA-LLRAAPTAPNFLDHFGSFHTK 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,067
Number of Sequences: 59808
Number of extensions: 233023
Number of successful extensions: 400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)