Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M22
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    26   0.26 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   5.6  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   9.8  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 325 EPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*T 158
           +P  VI + T  PS  L+NR G+      A+         P T+T++ T +  + T
Sbjct: 123 KPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFT 178


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +3

Query: 123 KLKMVSKAELACVYSALILVDD--------DVAVTGEKISTILKAAAVDVEPYWPGLFAK 278
           ++KM  K EL C+ + ++   D        +V +  EKI  +L+       P  PG FAK
Sbjct: 305 EMKM-DKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAK 363

Query: 279 AL 284
            L
Sbjct: 364 LL 365


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 302 TDIDAFQGFGEQTWPI 255
           TD+D F+G     WP+
Sbjct: 515 TDLDDFKGVCGMKWPL 530


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -1

Query: 138 TPFLVLNVQVAVGLSSRENKHV*VLTTKRNRKGGYVRISSFLIGRP 1
           TP L     V +  SS   +H   L  + N+K    RI      RP
Sbjct: 217 TPVLASYKSVPMSFSSPRRRHSINLLEEDNQKPNVCRICGKSYARP 262


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 183 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 314
           + D+A+TG+   +I +   +    Y+  L    L  I    L T
Sbjct: 373 NSDIAITGKNFFSITRGLILSFVDYFVFLLCSILVNIAFIKLAT 416


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,357
Number of Sequences: 336
Number of extensions: 2120
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)