Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M20
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein...    48   2e-04
UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3; Endopterygota|...    40   0.047
UniRef50_Q0C1S5 Cluster: Mandelate racemase/muconate lactonizing...    33   5.3  
UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogene...    33   7.1  
UniRef50_Q86ER1 Cluster: Clone ZZD1516 mRNA sequence; n=2; Schis...    33   7.1  
UniRef50_O59779 Cluster: Uncharacterized protein C1235.01; n=1; ...    33   7.1  
UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein...    33   7.1  
UniRef50_UPI0000F2CB2B Cluster: PREDICTED: similar to HUS1 check...    32   9.3  
UniRef50_UPI000023CE24 Cluster: hypothetical protein FG10578.1; ...    32   9.3  

>UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein
           87F; n=16; Coelomata|Rep: Heterogeneous nuclear
           ribonucleoprotein 87F - Drosophila melanogaster (Fruit
           fly)
          Length = 385

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 22/34 (64%)
 Frame = +2

Query: 50  GWGNQXFGNYNQQSYSGGPTRNQAYGNNRSTPYN 151
           G G   FGN  QQSY GGP RN  +GNNR  PY+
Sbjct: 310 GGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYS 343


>UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3;
           Endopterygota|Rep: ENSANGP00000026814 - Anopheles
           gambiae str. PEST
          Length = 358

 Score = 39.9 bits (89), Expect = 0.047
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  GWGNQXFGNYNQQSYSGGPTRNQAYGNNRSTPY 148
           GWG   FGN  QQ Y+ GP R     N R+ PY
Sbjct: 318 GWGGNEFGNNYQQGYNAGPVRAGGNFNQRAAPY 350


>UniRef50_Q0C1S5 Cluster: Mandelate racemase/muconate lactonizing
           enzyme family protein; n=4; Bacteria|Rep: Mandelate
           racemase/muconate lactonizing enzyme family protein -
           Hyphomonas neptunium (strain ATCC 15444)
          Length = 356

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 339 VWTMMSVSSAPERTAYTSTVNSA 271
           VW M+S+S  P RTA+T ++NSA
Sbjct: 120 VWDMLSISPDPVRTAFTISINSA 142


>UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogeneous
           nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1) (HDP-1) (Topoisomerase-inhibitor
           suppressed); n=4; Eutheria|Rep: PREDICTED: similar to
           Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) - Canis familiaris
          Length = 407

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 50  GWGNQXFGNYNQQSYSGGPTRNQAYGNNRSTPY 148
           G     FGNYN QS + GP +   +G   S PY
Sbjct: 344 GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 376


>UniRef50_Q86ER1 Cluster: Clone ZZD1516 mRNA sequence; n=2;
           Schistosoma japonicum|Rep: Clone ZZD1516 mRNA sequence -
           Schistosoma japonicum (Blood fluke)
          Length = 313

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = +2

Query: 50  GWGN----QXFGNY-NQQSYSGGPTRNQAYGN-NRSTPY 148
           GWG       FG+Y NQQ+Y+GGP R    G   R+ PY
Sbjct: 268 GWGQGGMGDGFGHYGNQQNYAGGPMRGGPPGGYQRNAPY 306


>UniRef50_O59779 Cluster: Uncharacterized protein C1235.01; n=1;
           Schizosaccharomyces pombe|Rep: Uncharacterized protein
           C1235.01 - Schizosaccharomyces pombe (Fission yeast)
          Length = 658

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 59  NQXFGNYNQQSYSGGPTRNQAYGNNRSTPYNMN 157
           N   GN N+Q+Y+     NQ YGNN +  YN N
Sbjct: 602 NSSSGNSNKQNYNN--NNNQNYGNNNNQNYNNN 632


>UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein
           A1; n=390; Euteleostomi|Rep: Heterogeneous nuclear
           ribonucleoprotein A1 - Homo sapiens (Human)
          Length = 372

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 50  GWGNQXFGNYNQQSYSGGPTRNQAYGNNRSTPY 148
           G     FGNYN QS + GP +   +G   S PY
Sbjct: 309 GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 341


>UniRef50_UPI0000F2CB2B Cluster: PREDICTED: similar to HUS1
           checkpoint homolog (S. pombe); n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to HUS1 checkpoint
           homolog (S. pombe) - Monodelphis domestica
          Length = 338

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 375 CLTILRASSWSRVWTMMSVSSAPERTAYTSTVNSAL-LVYLARNITIRIDLLCP 217
           CL+ + A+SW  VW  +   + P+  A T  ++ AL +   A+ + I++ L  P
Sbjct: 26  CLSNMVANSWINVWCKLDQGNFPDELANTGKLSRALRMAQNAKTMKIKLTLKYP 79


>UniRef50_UPI000023CE24 Cluster: hypothetical protein FG10578.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG10578.1 - Gibberella zeae PH-1
          Length = 687

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 298 STLRSTRYTHHGPHARPARSPQDC*TLDEPLAHI*KNFNIYVN*IVRSSVYL 453
           S+  +  YT+ G H  P  + +D   L EP A     F+ Y++ I+R ++YL
Sbjct: 181 SSYMALSYTY-GSHTHPEITSEDFAMLQEPFALANTTFSAYISPIIRHAMYL 231


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,694,473
Number of Sequences: 1657284
Number of extensions: 10786321
Number of successful extensions: 27115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27089
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)