Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M20
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    32   0.057
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   3.7  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   4.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   8.6  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 59  NQXFGNYNQQSYSGGPTRNQAYGNNRSTPYNMN 157
           N   GN N+Q+Y+     NQ YGNN +  YN N
Sbjct: 602 NSSSGNSNKQNYNN--NNNQNYGNNNNQNYNNN 632



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  QXFGNYNQQSYSGGPTRNQAYGNNRSTPYNMN 157
           Q + N N Q+Y  G   NQ Y NN ++    N
Sbjct: 611 QNYNNNNNQNY--GNNNNQNYNNNNNSSQGGN 640


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 17  EIRTHGKAIRVGWGNQ 64
           E+  HG+ I+VGWG +
Sbjct: 467 EVLLHGRRIKVGWGKE 482


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 157 VHIVWSRPIIPICLISSWTPAI 92
           + + +S P  P+C I  WTP I
Sbjct: 101 IPVNFSYPENPLCFIKQWTPVI 122


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 475 STSVPTTLNT---QKTLQFSSHKY*NSSKYELRAHLMSNNPE 359
           STS   T+++   +KT+ FS  K  N +  +  A ++  NPE
Sbjct: 169 STSAAATIDSNIDEKTVAFSEEKRFNFASTDCAAAVIKTNPE 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,701
Number of Sequences: 5004
Number of extensions: 44008
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)