Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M20
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1286 - 25882773-25883771                                         30   1.7  
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008...    27   8.9  

>08_02_1286 - 25882773-25883771
          Length = 332

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 157 VHIVWSRPIIPICLISSWTPAITL 86
           V ++WS P  P  L+SS+ PA+TL
Sbjct: 80  VVVLWSNPSTPDSLLSSFPPAVTL 103


>07_03_1557 -
           27699675-27699972,27700546-27700630,27700741-27700847,
           27700942-27701135,27701252-27701368,27701466-27701631,
           27701723-27701887,27702185-27703428
          Length = 791

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 609 YRGVAPFPSPSPPHKSMDHNGN 544
           + G A  P+ S PH+S++H+GN
Sbjct: 278 FMGGAAEPAASLPHRSLNHSGN 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,934,584
Number of Sequences: 37544
Number of extensions: 304583
Number of successful extensions: 789
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)