Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M20
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    26   0.33 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.5  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 74  NYNQQSYSGGPTRNQAYGNNRSTPYNMN 157
           NYN  +Y+     N  Y N +   YN+N
Sbjct: 95  NYNNNNYNNYNYNNNNYNNYKKLYYNIN 122


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 597  APFPSPSPPHKSMDHNGNFN 538
            +P P P PP     +N +FN
Sbjct: 1856 SPEPPPPPPRNHDQNNSSFN 1875


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 570 HKSMDHNGNFNLIS 529
           H S DHNGN++ ++
Sbjct: 674 HLSPDHNGNYSCVA 687


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 118 LISSWTPAITLLIIIAKGLISPTH 47
           LI+ W+  +    I   G++  TH
Sbjct: 131 LITGWSAVVITAAICTSGIVGRTH 154


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +2

Query: 59  NQXFGNYNQQSYSGGPTRNQAYGNNRSTPY 148
           N  + NYN  + +     N  Y NN    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +2

Query: 59  NQXFGNYNQQSYSGGPTRNQAYGNNRSTPY 148
           N  + NYN  + +     N  Y NN    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 75  IIISRVIAGVQLEIKHMGII 134
           I I  ++ GVQ E+K + +I
Sbjct: 4   IAILAMVVGVQAELKQINVI 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,685
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)