Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M19
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   3.4  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   3.4  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   4.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.0  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    25   6.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   6.0  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 327 NALKHAHMQLYFYTLLDWYNF 265
           N L+H H   +FY +LD  +F
Sbjct: 347 NLLEHLHQSFFFYFILDHLHF 367


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +2

Query: 14  CRDNSTCNLQ-TLVSTTVSYC-YFLACSC*G-KLNYVYNAISETSYILFDIAKY 166
           C     CNL   L    +  C YFL   C      YV+   SE + I F+ AKY
Sbjct: 244 CNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKY 297


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 425  SKKLFFWKHSHY*P*ACINVS 487
            S KL F+K  H  P AC NVS
Sbjct: 1077 SGKLIFYKSDHLDPNACSNVS 1097


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 134 FRKSHCTRNSIFPNNYMRGSNS 69
           F +  C  NS+  + YM GSNS
Sbjct: 293 FARKGCQSNSVVSSVYMNGSNS 314


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -3

Query: 373 NHKIDDKLNYLPK--ITKCT 320
           N K+DDKL Y+ K  I KCT
Sbjct: 260 NAKLDDKLTYVEKQIIEKCT 279


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 283 IGLVQFSININNNNYD 236
           +G  QFS NI+NNNY+
Sbjct: 542 VGNEQFSNNIDNNNYN 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,795
Number of Sequences: 5004
Number of extensions: 35192
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)