Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_M11
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 229 3e-61
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 100 5e-22
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 96 4e-21
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 93 5e-20
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 88 1e-18
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 79 7e-16
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 79 7e-16
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 66 5e-12
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 31 0.14
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.3
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 3.0
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 26 5.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 5.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 7.0
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 7.0
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 9.3
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 9.3
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 9.3
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 229 bits (561), Expect = 3e-61
Identities = 110/227 (48%), Positives = 159/227 (70%), Gaps = 1/227 (0%)
Frame = +2
Query: 107 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 286
MAL VPKA G PQ+ ++G R+ G+E+AV RN NA ++ ++ R++ GPNG NK+++NH+
Sbjct: 1 MALRVPKASG-PQLFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHL 59
Query: 287 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 466
+ F+T+DA TIIREL+V HPAAKL+V A+Q Q+ E+GD NFV+V +G R
Sbjct: 60 QQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIR 119
Query: 467 LGVTTSEIADGYERALDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFIS 646
+G+T EIA GYE AL +E+L + ++I+ ++ KE+ K I I SKQYG+E F+S
Sbjct: 120 MGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYGNEDFLS 179
Query: 647 ELVTKACVAILP-EKTTFNVDNVRVCKILGAGLLQSEVLSGMVFXRE 784
+LV KA + +LP + + FNVDN+RV KI+G+ L S+V+ GMVF RE
Sbjct: 180 DLVAKAILTVLPKDPSKFNVDNIRVVKIMGSSLYNSQVVKGMVFPRE 226
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 99.5 bits (237), Expect = 5e-22
Identities = 63/219 (28%), Positives = 117/219 (53%), Gaps = 4/219 (1%)
Frame = +2
Query: 125 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 304
KA VP +D + +E NI A + A ++R++ GP GM+KMI + +T
Sbjct: 3 KAATVPVAFQDREKP----QEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILT 58
Query: 305 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTS 484
+D TI++ L V HPAAK++V S QD E GDGT V++L+G + G+ +
Sbjct: 59 NDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPT 118
Query: 485 EIADGYERALDKCLEIL-PSLICNEIKDTKN-IKEVTKGIVAAIMSKQYGHEQFISELVT 658
IA+ ++RA ++ + + + E+ D ++ ++ T + + I+S QY + ++ +
Sbjct: 119 VIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVS-QYSN--LLAPIAV 175
Query: 659 KACVAILPEKTTFNVD--NVRVCKILGAGLLQSEVLSGM 769
A + ++ + NVD ++R+ K LG + +E++ G+
Sbjct: 176 DAVLKVIDPRVATNVDLKDIRIVKKLGGIIDDTELIPGL 214
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 96.3 bits (229), Expect = 4e-21
Identities = 62/228 (27%), Positives = 120/228 (52%), Gaps = 3/228 (1%)
Frame = +2
Query: 107 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 286
M+L P+ P + +LK+G G + + NINAC ++R+ GP G +K++++
Sbjct: 1 MSLGGPQIPVI--VLKEGTDDSQGRGQLL-SNINACVAVQDTIRTTLGPLGADKLMVDDR 57
Query: 287 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 466
+ +++D TI++ LD+ HPAAK +V ++ QDAEVGDGT V+V +G
Sbjct: 58 GEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVE 117
Query: 467 LGVTTSEIADGYERALDKCLEILPSLICN-EIKDTKNIKE-VTKGIVAAIMSKQY-GHEQ 637
GV++ I GY +A + + + + ++ D +++ +TK A+ SK +
Sbjct: 118 DGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNST 177
Query: 638 FISELVTKACVAILPEKTTFNVDNVRVCKILGAGLLQSEVLSGMVFXR 781
F +++V A + + ++ N + + + K+ G + S ++ G+ F +
Sbjct: 178 FFTKMVVDAVLTL--DQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKK 223
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 92.7 bits (220), Expect = 5e-20
Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Frame = +2
Query: 185 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 364
+AV +I A K A VR++ GP G++K++I+ + VT+D TI+ +++VEH AKL+
Sbjct: 34 DAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLL 93
Query: 365 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALD---KCLEIL 535
V S+ QD E+GDGT V+VL+G G+ IADGYE+A K L+ +
Sbjct: 94 VQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAI 153
Query: 536 PSLICNEIKDTKNI-KEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNV 712
++ ++T N+ + + + ++SK H+ F + V ++ + + +
Sbjct: 154 SDVVDFSPENTTNLFRSAKTSLGSKVVSK--AHDHFANIAVDAVLSVADLQRKDVDFELI 211
Query: 713 RVCKILGAGLLQSEVLSGMVFXREV 787
+V +G + ++++ G+V +++
Sbjct: 212 KVDGKVGGSVDDTKLVKGVVVDKDM 236
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 88.2 bits (209), Expect = 1e-18
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 5/219 (2%)
Frame = +2
Query: 125 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 304
+AP + G ++ SG E+ +N+ A A V+S+ GP G++KM+++ I VT
Sbjct: 3 QAPRESTLFLSGEKI-SG-EDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVT 60
Query: 305 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTS 484
+D TI+ LDVEHPA K++V +Q QD EVGDGT V++++ + + +
Sbjct: 61 NDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPT 120
Query: 485 EIADGYERALDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGHE-QFISELVTK 661
I GY A+ + ++ + ++ + D+ + + ++ SK G++ F S +
Sbjct: 121 TIITGYRLAIREAVKFMTDVLSCSV-DSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVD 179
Query: 662 ACVAILPE----KTTFNVDNVRVCKILGAGLLQSEVLSG 766
A +++ +T + V V + K G +S ++ G
Sbjct: 180 AMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKG 218
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 79.0 bits (186), Expect = 7e-16
Identities = 40/120 (33%), Positives = 65/120 (54%)
Frame = +2
Query: 185 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 364
+A NI A K A +R+ GP M KM+++ + +T+D I+RE++V HPAAK M
Sbjct: 19 KAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSM 78
Query: 365 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL 544
+ ++ QD EVGDGT VI+L+G + + +++AL+ L I+ +
Sbjct: 79 IELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEI 138
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 79.0 bits (186), Expect = 7e-16
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Frame = +2
Query: 233 VRSAYGPNGMNKMIINHIDKQFV-TSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGT 409
V+S GP GM+K++ ++ V T+D TI++ + +++ AAK++V S++QD EVGDGT
Sbjct: 36 VKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGT 95
Query: 410 NFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKDTKNIKEVT 589
V V + + I DGY A ++ L + + D +
Sbjct: 96 TSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDL 155
Query: 590 KGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCKILGAGLLQSEVLSGM 769
+ I +S + Q + A A+L K + N+DN+++ KILG L S + G
Sbjct: 156 ENIARTTLSSKI-LSQNKNHFAQLAVDAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGF 214
Query: 770 VFXREV 787
+ + +
Sbjct: 215 ILNKTI 220
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.1 bits (154), Expect = 5e-12
Identities = 45/196 (22%), Positives = 89/196 (45%)
Frame = +2
Query: 185 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 364
+A+ NI+A ++S GP G KM+++ +T D ++ E+ +++P A +
Sbjct: 16 QALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCI 75
Query: 365 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL 544
A+ QD GDGT V +L G R G+ S I+DG+ A ++ L L S
Sbjct: 76 AKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSF 135
Query: 545 ICNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCK 724
+ D + + V K ++ +S + + ++ V A + I ++ V + K
Sbjct: 136 KTDFEVDREVLLNVAKTSLSTKISSKV--VESLAPAVVDAILTIRRPDEPIDLHMVEIMK 193
Query: 725 ILGAGLLQSEVLSGMV 772
+ ++++ G++
Sbjct: 194 MQNRSASDTQLIRGLL 209
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 246 YAERTLCANCLQALIFLYTASSNPENIRA 160
+AER C NC L F YT NP I A
Sbjct: 65 FAERIFCKNCGTTLYFAYTNGKNPYFINA 93
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 660 KPVLQYYQKKLHLMLIMLEYAKF*VLDCCNLRYFLEWYL 776
KP L Y ++ HL + + KF LD CN+ YF+ YL
Sbjct: 140 KPTLLYTNQRDHLDRLC-DQVKF-YLDQCNVEYFVAPYL 176
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 456 NYSAWE*LPVKLLMDMREHLTNVWKSFLLS 545
NYS WE + + L +R L N KSF+L+
Sbjct: 559 NYSLWEAVGISLNYIVRNGLINSHKSFVLT 588
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 554 EIKDTKNIK-EVTKGIVAAIMSKQYGHEQFISELV 655
E+ T NIK + ++G++ S QYG Q ISELV
Sbjct: 76 EVNVTFNIKADPSEGLLNFSQSLQYGQCQGISELV 110
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 771 TIPESTSDCNSPAPRILHTLTLSTLNVVFSGSIATQAFVTSS 646
++P S S S + TLT S +V ++G+ A TSS
Sbjct: 304 SVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSS 345
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 771 TIPESTSDCNSPAPRILHTLTLSTLNVVFSGSIATQAFVTSS 646
++P S S S TLT S V F+G+ A TSS
Sbjct: 412 SVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSS 453
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 786 TSRXNTIPESTSDCNSPAPRILHTLTLSTLNVVFSGSIATQAFVTSSEMNCS 631
TS P +TSD +P PR + T +++ +S S ++ +TSS + S
Sbjct: 119 TSSVACFPYATSDAPNPIPR-GDSATSTSIAPTYSASDSSATTITSSSPSTS 169
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 670 NTGFRDKLRNELFMTILFRHDSSNNTLCNFFNVF 569
N F + + E+ LF HD NN L N +F
Sbjct: 230 NAPFPNFISKEILHYYLFIHDEDNNDLSNSKQIF 263
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 9.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 320 WCQHHW*QIAYQY 282
W HHW Q+ YQ+
Sbjct: 421 WAVHHWKQMGYQF 433
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 573 FFVSFISLQMREGRISRHLSSALSYPSAISLVV 475
FF + + + R +RH++S L+YP +I ++
Sbjct: 120 FFYTRDFPKFQSSRTARHITSLLTYPMSIGAIL 152
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 405 PSPTSASCI*LASTISLAAGCSTSNSLMMVPASLVTNCLSI*LMIILFMPLGPYAERTLC 226
P PTSAS AS SL G N ++ +V + +++I+F L + +
Sbjct: 69 PEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLGGLIVLVIIFYCLRHFKRKKFL 128
Query: 225 A 223
A
Sbjct: 129 A 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,132
Number of Sequences: 5004
Number of extensions: 57641
Number of successful extensions: 162
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -