Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_M10
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 33 0.22
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 33 0.29
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196... 30 2.1
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 30 2.7
01_05_0438 + 22142646-22143659,22144319-22144858 30 2.7
08_02_1084 - 24232968-24234779 29 3.6
09_03_0199 - 13421210-13421578 29 4.8
05_02_0018 + 5626122-5626200,5626683-5626709,5626972-5627042,562... 29 4.8
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 29 6.3
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 28 8.3
02_05_1309 + 35627549-35627679,35628377-35629361 28 8.3
>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 593 SRYY*ITLHDRPCQLLNALVIDNVVPGVGRV-W*HRSTVGISR-IPGWRLXLPFLQKLFS 766
SR Y + H L NA+ DN V +G++ HR + S+ +P W LP L
Sbjct: 905 SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964
Query: 767 DLLLND 784
++++
Sbjct: 965 AKIVHE 970
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 33.1 bits (72), Expect = 0.29
Identities = 21/48 (43%), Positives = 23/48 (47%)
Frame = -3
Query: 538 AVVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMG 395
A V+GL AV G V A+ GVG G S G A GG G G G
Sbjct: 43 AGVLGLIGETVGAVVGATVGAVDGVGAGASAGGGVAGGGGVAGGGARG 90
>04_03_0252 -
13517763-13517861,13518845-13519315,13519400-13519679,
13519747-13519829
Length = 310
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 502 AVGGDAVSAISGVGRG-DSVRCGNAIGGSDQGRG 404
AVGGDA +A++G G G ++ G GG D G
Sbjct: 57 AVGGDAAAAVAGSGGGMTTMMMGGGGGGGDDAGG 90
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 541 LAVVIGLPSVDAEAVGGDAVSAISGVGR-GDSVRCGNAIGGSDQGRGEMG 395
L V G PS + A GG + IS VG G V GN GG + G G
Sbjct: 421 LGKVFGGPSENLGAGGGGDRTLISAVGADGGGVGLGNVFGGPRENLGSDG 470
>01_05_0438 + 22142646-22143659,22144319-22144858
Length = 517
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 496 GGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGS 392
GGD+V+ + GVG GD GG GRG GS
Sbjct: 377 GGDSVTVVQGVGDGDG-------GGDGIGRGRKGS 404
>08_02_1084 - 24232968-24234779
Length = 603
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 526 GLPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGS 392
G P A GG+ G+GRG + N +GG GRG MG+
Sbjct: 311 GGPGGGAGGGGGNWGRGGGGMGRGPAGNMRNRMGGPAGGRGIMGN 355
>09_03_0199 - 13421210-13421578
Length = 122
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 490 DAVSAISGVGRGDSVRCGNAIGGSDQGRGEMG 395
D+ S + VGRG ++ + IGGS G G G
Sbjct: 86 DSCSKANDVGRGHAIEGKSGIGGSSWGHGRHG 117
>05_02_0018 +
5626122-5626200,5626683-5626709,5626972-5627042,
5627123-5627248,5627726-5627755
Length = 110
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 526 GLPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQ 413
G S DAE+ GG A+ G GRG CG + G ++
Sbjct: 62 GGASHDAESEGGGMRWALVGEGRGSCAACGESGGEGER 99
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 562 ADIRK*RLAVVIG-LPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGSP 389
AD R R G + + EA G+ V AI G G GD+ G+A ++ +G+P
Sbjct: 368 ADARARRKGAAGGDVDEEEGEAGAGNGVPAIFGRGGGDAGEEGDAAVSKEETAASIGAP 426
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 TPAPLKLSSNITLKPSARPPKPLARFT--KPPTGTA 314
T A + +S + +KPS +PP+ L R + PT TA
Sbjct: 231 TTARVPISGSTEVKPSLKPPRALPRVATMRAPTNTA 266
>02_05_1309 + 35627549-35627679,35628377-35629361
Length = 371
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 544 RLAVVIGLPSVDAEAVGGDA-VSAISGVGRGDSVRCGNAIGGSDQGRGEMGS 392
R VV+G AE GG A + GVG G G GG + GRG G+
Sbjct: 140 RSGVVVGGTEALAEDEGGGAGEEEVVGVGGGVGAEGGRG-GGGEGGRGGAGA 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,138
Number of Sequences: 37544
Number of extensions: 295897
Number of successful extensions: 1241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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