Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_M08
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100... 306 1e-83
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 56 3e-08
04_04_1339 + 32760424-32760584,32762428-32764462 33 0.36
01_07_0231 + 42176598-42178117,42178232-42179753 32 0.63
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524... 30 2.5
08_02_0873 + 22100124-22100810 29 3.4
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 28 7.8
>07_03_1015 +
23307700-23307906,23309274-23309483,23309915-23310085,
23310163-23310286,23310753-23310814,23311185-23311266,
23311870-23312009
Length = 331
Score = 306 bits (752), Expect = 1e-83
Identities = 139/214 (64%), Positives = 167/214 (78%)
Frame = +1
Query: 178 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 357
+ + T+VI QG TGK GTFH++QA++YGT +VGGV+PKK GTEHLG PVF +V EAKA
Sbjct: 37 VFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKA 96
Query: 358 GTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVG 537
T A ASVIYVPPP + L+VCITEG+PQHDMV+VK AL +Q+K+RL+G
Sbjct: 97 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIG 156
Query: 538 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGD 717
PNCPGII P +CKIGIMP +HK G +G+VSRSGTLTYEA QTT GLGQ+ CVGIGGD
Sbjct: 157 PNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
Query: 718 PFNGTDFIDCLXVFLKDPXTKGIILIGEIGGNAE 819
PFNGT+F+DCL F+ DP T+GI+LIGEIGG AE
Sbjct: 217 PFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAE 250
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 56.0 bits (129), Expect = 3e-08
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Frame = +1
Query: 445 LIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIG--------IMPAAV 600
++ I EGVP+ D ++ + R N ++GP G I KIG I+ +
Sbjct: 123 VVAIIAEGVPESDTKQLI-SYARANNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKL 181
Query: 601 HKRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLXVFLKDPXTK 780
++ G +G VS+SG ++ E + G + IGGD F G+ D + F P K
Sbjct: 182 YRPGSVGFVSKSGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVK 241
Query: 781 GIILIGEIGGNAE 819
++++GE+GG E
Sbjct: 242 MMVVLGELGGKDE 254
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 40 FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 180
F RR N ST M V +L DGL G++ A+G P+A+ ++ L
Sbjct: 550 FGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596
>01_07_0231 + 42176598-42178117,42178232-42179753
Length = 1013
Score = 31.9 bits (69), Expect = 0.63
Identities = 24/78 (30%), Positives = 32/78 (41%)
Frame = +1
Query: 148 GNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKP 327
G E I++S TK TGK TF +L VGG + +G+
Sbjct: 672 GTTTPEKELESIVSSSTKSSKLA-TGKMVTFGPGNSLR-SEDFVGGADALLSKATEIGRG 729
Query: 328 VFGTVKEAKAGTGATASV 381
VFGTV A G G ++
Sbjct: 730 VFGTVYRASVGEGRVVAI 747
>04_04_0254 -
23951495-23951902,23952000-23952155,23952344-23952485,
23952772-23953160,23953833-23953948,23954290-23954371
Length = 430
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +2
Query: 212 RVSLESRVPSTVNKPLTMVLKLLEECHQRRLVQ 310
R +E +VPSTVN LT VL+ CH RR VQ
Sbjct: 390 RTYIEDKVPSTVN--LT-VLEPCSRCHVRRRVQ 419
>08_02_0873 + 22100124-22100810
Length = 228
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Frame = +1
Query: 526 RLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVV------SRSGTLTYEACHQTTITGLG 687
R P+C G + PE C+ G +P V +R C + +R Y C + +
Sbjct: 77 RCPDPSCGGALDPELCR-GALPGDVFERWCAALCEAMFAGARRTYCPYPGCSEMMVADAD 135
Query: 688 QTLCVGI 708
C G+
Sbjct: 136 DEGCAGV 142
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 219 ETLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIFELRKNPDWHSH-CR-IIECKSTK 46
+TL +H CK QI G + G Y+ ++ E +KNPDW CR I C +
Sbjct: 227 KTLGHHTS-CCKCQIVQG---QFCGDCLYMRYGENVLEAKKNPDWICPVCRGICNCSICR 282
Query: 45 GKK 37
KK
Sbjct: 283 TKK 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,712,320
Number of Sequences: 37544
Number of extensions: 494575
Number of successful extensions: 1295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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