Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_M08
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0) 144 1e-34
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 4e-22
SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0) 59 5e-09
SB_10131| Best HMM Match : Ligase_CoA (HMM E-Value=0) 59 5e-09
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 33 0.28
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3) 30 2.0
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05) 29 4.5
SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 28 7.9
>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 445
Score = 144 bits (348), Expect = 1e-34
Identities = 63/98 (64%), Positives = 76/98 (77%)
Frame = +1
Query: 526 RLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVG 705
RL+GPNCPG+I P +CKIGIMP +H G +G+VSRSGTLTYEA QTT G GQ+ CVG
Sbjct: 14 RLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVG 73
Query: 706 IGGDPFNGTDFIDCLXVFLKDPXTKGIILIGEIGGNAE 819
IGGDP G++FID L +F DP T+ I++IGEIGG AE
Sbjct: 74 IGGDPIPGSNFIDILELFQNDPQTEAIVMIGEIGGTAE 111
>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 102 bits (244), Expect = 4e-22
Identities = 52/81 (64%), Positives = 58/81 (71%), Gaps = 15/81 (18%)
Frame = +1
Query: 622 VVSRSGTLTYEACHQTTITGLGQTLCV---------------GIGGDPFNGTDFIDCLXV 756
+VSRSGTLTYEA HQT+ LGQ+LCV GIGGDPFNGT+F+DCL V
Sbjct: 2 IVSRSGTLTYEAVHQTSHVNLGQSLCVVNNESCVYNYLFLPEGIGGDPFNGTNFVDCLEV 61
Query: 757 FLKDPXTKGIILIGEIGGNAE 819
FL DP TKGI+LIGEIGG AE
Sbjct: 62 FLNDPGTKGIVLIGEIGGGAE 82
>SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 755
Score = 58.8 bits (136), Expect = 5e-09
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Frame = +1
Query: 448 IVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIG--------IMPAAVH 603
I I EG+P+ R+ + ++ ++GP G I P KIG I+ + ++
Sbjct: 144 IAIIAEGIPEAK-TRILNKKAKELGITIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 202
Query: 604 KRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLXVFLKDPXTKG 783
+ G + VSRSG ++ E + T G + IGGD + GT FID + + + K
Sbjct: 203 RPGSVAYVSRSGGMSNELNNIIARTTDGVYEGIAIGGDRYPGTTFIDHVLRYQDNQDIKM 262
Query: 784 IILIGEIGGNAE 819
I+L+GE+GG E
Sbjct: 263 IVLLGEVGGRDE 274
>SB_10131| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 609
Score = 58.8 bits (136), Expect = 5e-09
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Frame = +1
Query: 448 IVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIG--------IMPAAVH 603
I I EG+P+ R+ + ++ ++GP G I P KIG I+ + ++
Sbjct: 293 IAIIAEGIPEAK-TRILNKKAKELGITIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 351
Query: 604 KRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLXVFLKDPXTKG 783
+ G + VSRSG ++ E + T G + IGGD + GT FID + + + K
Sbjct: 352 RPGSVAYVSRSGGMSNELNNIIARTTDGVYEGIAIGGDRYPGTTFIDHVLRYQDNQDIKM 411
Query: 784 IILIGEIGGNAE 819
I+L+GE+GG E
Sbjct: 412 IVLLGEVGGRDE 423
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 33.5 bits (73), Expect = 0.21
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+WYH S+ NWYH S + W H S
Sbjct: 265 NWYHPSKTQANWYHPSKTQSNWNHPS 290
Score = 32.7 bits (71), Expect = 0.37
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+WYH ++ NWYH S + W H S
Sbjct: 255 NWYHPTKTQANWYHPSKTQANWYHPS 280
Score = 32.7 bits (71), Expect = 0.37
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+WYH S+ NWYH + + W H S
Sbjct: 465 NWYHPSKTQANWYHPTKTQANWYHPS 490
Score = 31.9 bits (69), Expect = 0.64
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLH 617
+WYH ++ NWYH S + W H
Sbjct: 475 NWYHPTKTQANWYHPSKTKANWYH 498
Score = 31.5 bits (68), Expect = 0.85
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+WYH ++ NWYH + + W H S
Sbjct: 145 NWYHRTKTQANWYHPTKTQANWYHPS 170
Score = 31.5 bits (68), Expect = 0.85
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+WYH ++ NWYH + + W H S
Sbjct: 245 NWYHPTKTQANWYHPTKTQANWYHPS 270
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLH 617
+WYH S+ NWYH + W H
Sbjct: 485 NWYHPSKTKANWYHPIKTQSNWYH 508
Score = 30.7 bits (66), Expect = 1.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLH 617
+WYH ++ NWYH + + W H
Sbjct: 505 NWYHPTKTQANWYHPTKTQANWYH 528
Score = 30.7 bits (66), Expect = 1.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLH 617
+WYH ++ NWYH + + W H
Sbjct: 515 NWYHPTKTQANWYHPTKTQANWCH 538
Score = 29.5 bits (63), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLH 617
+WYH + NWYH + + W H
Sbjct: 495 NWYHPIKTQSNWYHPTKTQANWYH 518
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTW 611
+WYH S+ NWYH + + W
Sbjct: 345 NWYHPSKTQVNWYHPTKTQANW 366
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 33.1 bits (72), Expect = 0.28
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+WYH ++ NWYH S + W H S
Sbjct: 500 NWYHPTKTQANWYHPSKTQSNWYHPS 525
Score = 31.5 bits (68), Expect = 0.85
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+WYH ++ NWYH + + W H S
Sbjct: 490 NWYHPTKTQCNWYHPTKTQANWYHPS 515
Score = 29.9 bits (64), Expect = 2.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLH 617
+WYH ++ NWYH + + W H
Sbjct: 480 NWYHPTKTQANWYHPTKTQCNWYH 503
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTWLHRS 623
+W H S+ NWYH + W H S
Sbjct: 390 NWNHPSKTQANWYHPPKTQSNWYHPS 415
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -1
Query: 579 NFTLLGSNDTRTVRTNQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLNSF*NGC-CS 403
NF+L D + LV+ ++G + C GHF L + + C C+
Sbjct: 337 NFSLSLDPDQVVQWLTRGPLVIDEDGECLCGNFSTG-LLCKHCVPGHFFLQGYCSRCQCN 395
Query: 402 SRGRYINNRGSCSC 361
G + RG CSC
Sbjct: 396 GHGSICDERGKCSC 409
>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
Length = 416
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 546 SWYHCSREV*NWYHASCSAQTW 611
SWYHCS+ H CSA +W
Sbjct: 215 SWYHCSKIPDKERHQFCSANSW 236
>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
Length = 226
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 199 KVIVQGFTGKQGTFHSQQALDYGTKV-VGGVSPKK 300
KV+V G TGK G QQALD G V V SP+K
Sbjct: 9 KVVVFGGTGKTGLHVVQQALDRGHHVTVIARSPEK 43
>SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 639 PRTRYNSDATTFVHCSWHDTNFTLLGSNDTRTVRTNQ-SRLVLSQEGMF 496
P+++YN D V S T +G +D+R R Q +R EG F
Sbjct: 80 PKSQYNEDVREDVRSSGESTQLAGVGEDDSRQHRQAQAARQTQMDEGFF 128
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 806 PISPMRMMPLVSGSLRKTXKQSMKSVPLKGSPPIPT 699
P+ P +P ++ SL Q+ P K PPIPT
Sbjct: 194 PLYPYNPLPRITTSLFLVSLQASSLYPYKPLPPIPT 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,331,032
Number of Sequences: 59808
Number of extensions: 587972
Number of successful extensions: 1473
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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